Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 HMGA1P5-201ENST00000412453 271 ntBASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 LIN28AP1-201ENST00000429574 405 ntBASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 TSPY23P-201ENST00000440136 739 ntBASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SMIM28A0A1B0GU29 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMIM28A0A1B0GU29 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMIM28A0A1B0GU29 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 TSPY21P-201ENST00000433481 731 ntBASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 ATP5G1P1-201ENST00000448724 379 ntBASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMIM28A0A1B0GU29 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 AC104076.2-201ENST00000448912 469 ntBASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 AC073130.3-201ENST00000624389 2278 ntBASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 AL158211.5-201ENST00000623583 2518 ntBASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 AFG3L1P-217ENST00000557444 2447 ntBASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.62■□□□□ 0.89
SMIM28A0A1B0GU29 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.61■□□□□ 0.89
SMIM28A0A1B0GU29 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms