Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU4-78P-201ENST00000410940 126 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 RNU6-325P-201ENST00000411132 105 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.66□□□□□ -1.34
COL9A1P20849 RPS4XP5-201ENST00000419038 768 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL159987.2-201ENST00000432754 307 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC6.66□□□□□ -1.34
COL9A1P20849 DEFA11P-201ENST00000446470 261 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 RPL21P6-201ENST00000479171 504 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC6.66□□□□□ -1.34
COL9A1P20849 AL442163.3-201ENST00000554110 156 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 MEG8-215ENST00000555354 469 ntTSL 3 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC6.66□□□□□ -1.34
COL9A1P20849 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC104465.1-201ENST00000611365 139 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC245014.3-201ENST00000618589 347 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 AL034417.4-202ENST00000642135 2236 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
COL9A1P20849 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL9A1P20849 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 AC007785.2-201ENST00000598627 1916 ntBASIC6.66□□□□□ -1.34
COL9A1P20849 OR8B8-202ENST00000642064 3914 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC6.66□□□□□ -1.34
COL9A1P20849 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL9A1P20849 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC6.65□□□□□ -1.34
COL9A1P20849 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 BX322639.1-202ENST00000423987 2213 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.65□□□□□ -1.34
COL9A1P20849 AC093278.2-201ENST00000564956 2485 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 RNA5SP65-201ENST00000363166 119 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 RNA5SP507-201ENST00000363603 121 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 RNU6-1303P-201ENST00000364841 107 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 SNORD73A-201ENST00000386062 65 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 U3.39-201ENST00000408569 239 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 RNU4-65P-201ENST00000410473 140 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC6.65□□□□□ -1.34
COL9A1P20849 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 BX679664.1-201ENST00000434429 253 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 CRYGGP-201ENST00000443337 145 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC6.65□□□□□ -1.34
COL9A1P20849 PRDX3P3-201ENST00000447765 522 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 RPL23AP81-201ENST00000455252 467 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC008481.1-201ENST00000463278 396 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC006511.1-201ENST00000470614 315 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 COPS8P2-201ENST00000473228 627 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC010469.2-201ENST00000496412 480 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC008953.1-201ENST00000497334 318 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 SCARNA5-201ENST00000516201 276 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 RNU6-677P-201ENST00000516914 101 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC109479.2-201ENST00000517842 174 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 RN7SL802P-201ENST00000577858 299 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 GMFG-212ENST00000602185 423 ntTSL 3 BASIC6.65□□□□□ -1.34
COL9A1P20849 AC007566.2-201ENST00000603642 413 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AC011921.3-201ENST00000605540 361 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 Y_RNA.772-201ENST00000606692 102 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.65□□□□□ -1.34
COL9A1P20849 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 AL596275.2-204ENST00000641628 552 ntBASIC6.65□□□□□ -1.34
COL9A1P20849 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
COL9A1P20849 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
COL9A1P20849 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 GRIA4-206ENST00000525187 2822 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 AC005224.3-201ENST00000584683 2140 ntBASIC6.65□□□□□ -1.35
COL9A1P20849 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC6.65□□□□□ -1.35
COL9A1P20849 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC6.65□□□□□ -1.35
COL9A1P20849 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.65□□□□□ -1.35
COL9A1P20849 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
COL9A1P20849 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.65□□□□□ -1.35
COL9A1P20849 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.64□□□□□ -1.35
COL9A1P20849 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 LINC00652-201ENST00000412553 3299 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 93.7 ms