Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 AL008638.2-201ENST00000453934 2383 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 RNU1-16P-201ENST00000365477 164 ntBASIC10.21□□□□□ -0.77
MSH5O43196 SNORA70G-201ENST00000383923 142 ntBASIC10.21□□□□□ -0.77
MSH5O43196 IGHV2-5-201ENST00000390597 378 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
MSH5O43196 MIR888-201ENST00000401186 77 ntBASIC10.21□□□□□ -0.77
MSH5O43196 AL139100.1-201ENST00000408001 498 ntBASIC10.21□□□□□ -0.77
MSH5O43196 CBX1P3-201ENST00000413296 527 ntBASIC10.21□□□□□ -0.77
MSH5O43196 RPL36P1-201ENST00000419720 225 ntBASIC10.21□□□□□ -0.77
MSH5O43196 RPL21P66-201ENST00000426566 466 ntBASIC10.21□□□□□ -0.77
MSH5O43196 AC013403.1-201ENST00000436954 263 ntBASIC10.21□□□□□ -0.77
MSH5O43196 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC10.21□□□□□ -0.77
MSH5O43196 RPL23AP33-201ENST00000442301 452 ntBASIC10.21□□□□□ -0.77
MSH5O43196 YRDCP3-201ENST00000456507 480 ntBASIC10.21□□□□□ -0.77
MSH5O43196 RNU6-893P-201ENST00000458841 100 ntBASIC10.21□□□□□ -0.77
MSH5O43196 RPL23AP2-201ENST00000471227 466 ntBASIC10.21□□□□□ -0.77
MSH5O43196 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC10.21□□□□□ -0.77
MSH5O43196 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC10.21□□□□□ -0.77
MSH5O43196 AC142086.3-201ENST00000563896 802 ntBASIC10.21□□□□□ -0.77
MSH5O43196 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
MSH5O43196 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC10.21□□□□□ -0.77
MSH5O43196 AP000787.2-201ENST00000604432 568 ntBASIC10.21□□□□□ -0.77
MSH5O43196 RNU6-94P-201ENST00000607728 107 ntBASIC10.21□□□□□ -0.77
MSH5O43196 AC015813.4-201ENST00000610469 179 ntBASIC10.21□□□□□ -0.77
MSH5O43196 MIR6813-201ENST00000621638 56 ntBASIC10.21□□□□□ -0.77
MSH5O43196 AC024580.1-201ENST00000623020 674 ntBASIC10.21□□□□□ -0.77
MSH5O43196 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC10.21□□□□□ -0.78
MSH5O43196 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC10.21□□□□□ -0.78
MSH5O43196 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
MSH5O43196 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC10.21□□□□□ -0.78
MSH5O43196 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
MSH5O43196 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC10.2□□□□□ -0.78
MSH5O43196 MITF-203ENST00000328528 4680 ntTSL 5 BASIC10.2□□□□□ -0.78
MSH5O43196 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC10.2□□□□□ -0.78
MSH5O43196 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC10.2□□□□□ -0.78
MSH5O43196 RNA5SP448-201ENST00000363151 111 ntBASIC10.2□□□□□ -0.78
MSH5O43196 RNU6-597P-201ENST00000365620 102 ntBASIC10.2□□□□□ -0.78
MSH5O43196 RNU6-987P-201ENST00000384759 104 ntBASIC10.2□□□□□ -0.78
MSH5O43196 SNORD56-201ENST00000413522 71 ntBASIC10.2□□□□□ -0.78
MSH5O43196 SNX18P14-201ENST00000429308 574 ntBASIC10.2□□□□□ -0.78
MSH5O43196 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 AC112498.1-201ENST00000444401 332 ntBASIC10.2□□□□□ -0.78
MSH5O43196 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 RN7SL184P-201ENST00000488308 297 ntBASIC10.2□□□□□ -0.78
MSH5O43196 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC10.2□□□□□ -0.78
MSH5O43196 RNU1-86P-201ENST00000516108 154 ntBASIC10.2□□□□□ -0.78
MSH5O43196 RNU1-107P-201ENST00000516617 154 ntBASIC10.2□□□□□ -0.78
MSH5O43196 AP000435.1-201ENST00000528539 496 ntBASIC10.2□□□□□ -0.78
MSH5O43196 GNG2-215ENST00000557376 573 ntTSL 4 BASIC10.2□□□□□ -0.78
MSH5O43196 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 AC022031.1-201ENST00000585985 2593 ntBASIC10.2□□□□□ -0.78
MSH5O43196 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC10.2□□□□□ -0.78
MSH5O43196 MS4A2-204ENST00000617306 3512 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
MSH5O43196 AC073869.8-201ENST00000641806 335 ntBASIC10.2□□□□□ -0.78
MSH5O43196 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 OSBPL6-202ENST00000315022 2999 ntTSL 2 BASIC10.2□□□□□ -0.78
MSH5O43196 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC10.2□□□□□ -0.78
MSH5O43196 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
MSH5O43196 ZNF334-206ENST00000625284 2495 ntAPPRIS ALT2 TSL 2 BASIC10.19□□□□□ -0.78
MSH5O43196 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC10.19□□□□□ -0.78
MSH5O43196 AC009948.5-201ENST00000624360 4406 ntBASIC10.19□□□□□ -0.78
MSH5O43196 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 AC005224.3-201ENST00000584683 2140 ntBASIC10.19□□□□□ -0.78
MSH5O43196 ZKSCAN8-202ENST00000457389 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 RNA5SP302-201ENST00000364896 100 ntBASIC10.19□□□□□ -0.78
MSH5O43196 SNORA72-201ENST00000384339 132 ntBASIC10.19□□□□□ -0.78
MSH5O43196 RNU6-14P-201ENST00000384630 106 ntBASIC10.19□□□□□ -0.78
MSH5O43196 MIR32-201ENST00000384965 70 ntBASIC10.19□□□□□ -0.78
MSH5O43196 AL606845.1-201ENST00000404881 255 ntBASIC10.19□□□□□ -0.78
MSH5O43196 RNU4-65P-201ENST00000410473 140 ntBASIC10.19□□□□□ -0.78
MSH5O43196 AL358779.1-201ENST00000415465 400 ntTSL 2 BASIC10.19□□□□□ -0.78
MSH5O43196 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC10.19□□□□□ -0.78
MSH5O43196 AC068134.3-201ENST00000513620 788 ntBASIC10.19□□□□□ -0.78
MSH5O43196 AC006199.1-201ENST00000548728 219 ntBASIC10.19□□□□□ -0.78
MSH5O43196 MIR4666B-201ENST00000578142 81 ntBASIC10.19□□□□□ -0.78
MSH5O43196 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 pRNA.9-201ENST00000618609 89 ntBASIC10.19□□□□□ -0.78
MSH5O43196 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC10.19□□□□□ -0.78
MSH5O43196 FKBP1AP4-201ENST00000631775 336 ntBASIC10.19□□□□□ -0.78
MSH5O43196 GTF2IP12-202ENST00000634317 5052 ntTSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC10.19□□□□□ -0.78
MSH5O43196 AC011008.2-201ENST00000624866 3352 ntBASIC10.19□□□□□ -0.78
MSH5O43196 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
MSH5O43196 FMO5-202ENST00000369272 2168 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
MSH5O43196 CASK-204ENST00000378166 3123 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 205.6 ms