Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 AC016251.2-201ENST00000623393 3089 ntBASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 AC007996.1-201ENST00000620414 2821 ntBASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
TRIM35Q9UPQ4 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AL589993.1-201ENST00000407450 2524 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 SNORA21-201ENST00000362423 132 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 RNU6-1255P-201ENST00000363434 112 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 RNU6-1303P-201ENST00000364841 107 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 Y_RNA.383-201ENST00000383855 97 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 SNORA51.9-201ENST00000384295 124 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 U3.39-201ENST00000408569 239 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 RNU7-169P-201ENST00000459456 61 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AP002453.1-201ENST00000492327 668 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 Y_RNA.713-201ENST00000517013 96 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC012339.2-201ENST00000523996 453 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC005363.1-201ENST00000530779 351 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 HNRNPCP4-201ENST00000571636 900 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 MIR4301-201ENST00000577203 66 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC060771.1-201ENST00000582031 164 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 DLEU2_2.2-201ENST00000615474 90 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AL512652.1-201ENST00000619006 500 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 AC024587.1-201ENST00000505925 2157 ntBASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
TRIM35Q9UPQ4 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 RN7SKP237-201ENST00000364663 301 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 RNU6-47P-201ENST00000383866 107 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 Y_RNA.597-201ENST00000410463 100 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 SYF2P2-201ENST00000417620 583 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 EIF4EP2-201ENST00000422816 654 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AL353997.1-201ENST00000432936 108 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 RPL36AP6-201ENST00000435770 321 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 RPL23AP74-201ENST00000437246 471 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 RPS15AP1-201ENST00000457423 391 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 CYCSP34-201ENST00000458172 304 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC110792.1-201ENST00000491826 472 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AP001086.1-201ENST00000494882 321 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC090958.1-201ENST00000511122 351 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC005341.1-201ENST00000571086 708 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 SNORD39.3-201ENST00000584451 71 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC005520.5-201ENST00000613926 164 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC091895.1-201ENST00000624494 256 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 AC024651.2-201ENST00000562480 2098 ntBASIC8.09□□□□□ -1.11
TRIM35Q9UPQ4 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC8.09□□□□□ -1.12
TRIM35Q9UPQ4 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
TRIM35Q9UPQ4 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC8.08□□□□□ -1.12
TRIM35Q9UPQ4 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms