Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A3P12111 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.96□□□□□ -1.94
COL6A3P12111 AL356057.3-201ENST00000402607 340 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.96□□□□□ -1.94
COL6A3P12111 SETP4-201ENST00000455717 868 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 AC106872.2-201ENST00000494303 480 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 RN7SKP272-201ENST00000516988 232 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 UBTFL10-201ENST00000528532 562 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 AP005262.1-201ENST00000582646 997 ntBASIC2.96□□□□□ -1.94
COL6A3P12111 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A3P12111 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
COL6A3P12111 AL022322.2-201ENST00000624072 20397 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL6A3P12111 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC2.95□□□□□ -1.94
COL6A3P12111 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL6A3P12111 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
COL6A3P12111 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC2.95□□□□□ -1.94
COL6A3P12111 DUTP6-201ENST00000425573 462 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC2.95□□□□□ -1.94
COL6A3P12111 SEPT14P1-201ENST00000458703 648 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AC092045.1-201ENST00000495716 1231 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AC092436.3-201ENST00000511788 257 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.95□□□□□ -1.94
COL6A3P12111 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.95□□□□□ -1.94
COL6A3P12111 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC2.95□□□□□ -1.94
COL6A3P12111 AC092608.2-201ENST00000624427 218 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL6A3P12111 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC2.95□□□□□ -1.94
COL6A3P12111 RNU6-582P-201ENST00000362989 107 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AL138827.1-201ENST00000402666 306 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.95□□□□□ -1.94
COL6A3P12111 AC107081.1-201ENST00000414975 361 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.95□□□□□ -1.94
COL6A3P12111 AC009948.4-201ENST00000604692 675 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 AC004696.1-201ENST00000614345 607 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
COL6A3P12111 KPNA2P2-201ENST00000419546 1489 ntBASIC2.95□□□□□ -1.94
COL6A3P12111 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL6A3P12111 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.94□□□□□ -1.94
COL6A3P12111 MIR513A2-201ENST00000385249 127 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC2.94□□□□□ -1.94
COL6A3P12111 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC2.94□□□□□ -1.94
COL6A3P12111 AC011602.1-201ENST00000546484 331 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.94□□□□□ -1.94
COL6A3P12111 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL6A3P12111 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL6A3P12111 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL6A3P12111 RPS3AP50-201ENST00000487064 803 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC2.94□□□□□ -1.94
COL6A3P12111 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC2.94□□□□□ -1.94
COL6A3P12111 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
COL6A3P12111 AC110754.1-201ENST00000399740 601 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 RANP7-201ENST00000418085 644 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.94□□□□□ -1.94
COL6A3P12111 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.94□□□□□ -1.94
COL6A3P12111 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
COL6A3P12111 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 AL022311.1-201ENST00000623726 19416 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC2.93□□□□□ -1.94
COL6A3P12111 RPL7P10-201ENST00000417407 739 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 AL121882.1-201ENST00000422893 417 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 RN7SL283P-201ENST00000489055 303 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC2.93□□□□□ -1.94
COL6A3P12111 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 AC008079.2-201ENST00000623543 20396 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC2.93□□□□□ -1.94
COL6A3P12111 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
COL6A3P12111 RPS4XP5-202ENST00000449995 1334 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 NPM1P10-201ENST00000398310 865 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC2.93□□□□□ -1.94
COL6A3P12111 AL451074.3-201ENST00000437709 472 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 AC091917.2-201ENST00000505002 744 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC2.93□□□□□ -1.94
COL6A3P12111 AL109741.3-201ENST00000561748 592 ntBASIC2.93□□□□□ -1.94
COL6A3P12111 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A3P12111 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
COL6A3P12111 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
COL6A3P12111 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 OR2X1P-201ENST00000421144 687 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 NANOGP6-201ENST00000429190 847 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.92□□□□□ -1.94
COL6A3P12111 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.92□□□□□ -1.94
COL6A3P12111 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.92□□□□□ -1.94
COL6A3P12111 AP001317.1-201ENST00000531194 960 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC018630.1-201ENST00000541376 925 ntBASIC2.92□□□□□ -1.94
COL6A3P12111 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.92□□□□□ -1.94
COL6A3P12111 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.92□□□□□ -1.94
COL6A3P12111 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC2.92□□□□□ -1.94
COL6A3P12111 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL6A3P12111 RNU6-253P-201ENST00000384730 105 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms