RNA–Protein interactions for RNA: ENST00000316048.2

SMCO3-201, Transcript of single-pass membrane protein with coiled-coil domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO3, Length 2,104 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3-201ENST00000316048 AEBP2Q6ZN18 517 aaPredicted RBP16.29■□□□□ 0.2
SMCO3-201ENST00000316048 CHIC1Q5VXU3 224 aa16.26■□□□□ 0.19
SMCO3-201ENST00000316048 PHF23Q9BUL5 403 aaPredicted RBP14.44□□□□□ -0.1
SMCO3-201ENST00000316048 SENP3Q9H4L4 574 aaPredicted RBP13.58□□□□□ -0.23
SMCO3-201ENST00000316048 PLPPR3Q6T4P5 718 aa13.36□□□□□ -0.27
SMCO3-201ENST00000316048 ADRA2BP18089 450 aa12.68□□□□□ -0.38
SMCO3-201ENST00000316048 FOXD1Q16676 465 aa12.66□□□□□ -0.38
SMCO3-201ENST00000316048 PPP6R1Q9UPN7 881 aa12.61□□□□□ -0.39
SMCO3-201ENST00000316048 KCNA4P22459 653 aa12.23□□□□□ -0.45
SMCO3-201ENST00000316048 PIAS4Q8N2W9 510 aaPredicted RBP12.03□□□□□ -0.48
SMCO3-201ENST00000316048 EHMT2Q96KQ7 1210 aa11.98□□□□□ -0.49
SMCO3-201ENST00000316048 PPP4R3CPQ6ZMV5 832 aa11.89□□□□□ -0.51
SMCO3-201ENST00000316048 SLC4A1APQ9BWU0 796 aaKnown RBP11.66□□□□□ -0.54
SMCO3-201ENST00000316048 NCBP3Q53F19 620 aaKnown RBP11.6□□□□□ -0.55
SMCO3-201ENST00000316048 CSRNP3Q8WYN3 585 aa11.58□□□□□ -0.56
SMCO3-201ENST00000316048 NPM3O75607 178 aaKnown RBP11.57□□□□□ -0.56
SMCO3-201ENST00000316048 CNKSR2Q8WXI2 1034 aa11.39□□□□□ -0.59
SMCO3-201ENST00000316048 MSH5O43196 834 aa11.35□□□□□ -0.59
SMCO3-201ENST00000316048 MAPK8IP2Q13387 824 aaPredicted RBP11.33□□□□□ -0.6
SMCO3-201ENST00000316048 SCAF1Q9H7N4 1312 aaKnown RBP11.33□□□□□ -0.6
SMCO3-201ENST00000316048 ZBTB22O15209 634 aa11.32□□□□□ -0.6
SMCO3-201ENST00000316048 RNF216Q9NWF9 866 aaPredicted RBP11.05□□□□□ -0.64
SMCO3-201ENST00000316048 FOXD4L1Q9NU39 408 aa11.03□□□□□ -0.64
SMCO3-201ENST00000316048 DNAJC5BQ9UF47 199 aa11.02□□□□□ -0.65
SMCO3-201ENST00000316048 DMRT2Q9Y5R5 561 aa10.95□□□□□ -0.66
SMCO3-201ENST00000316048 HOXD11P31277 338 aaPredicted RBP10.91□□□□□ -0.66
SMCO3-201ENST00000316048 POTEDQ86YR6 584 aa10.89□□□□□ -0.67
SMCO3-201ENST00000316048 SLC4A2P04920 1241 aa10.85□□□□□ -0.67
SMCO3-201ENST00000316048 MYCNP04198 464 aaPredicted RBP10.61□□□□□ -0.71
SMCO3-201ENST00000316048 ATXN8OSP0DMR3 200 aa10.51□□□□□ -0.73
SMCO3-201ENST00000316048 DCAF8L1A6NGE4 600 aa10.51□□□□□ -0.73
SMCO3-201ENST00000316048 ATF5Q9Y2D1 282 aaPredicted RBP10.45□□□□□ -0.74
SMCO3-201ENST00000316048 FKBP8Q14318 412 aa10.42□□□□□ -0.74
SMCO3-201ENST00000316048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.39□□□□□ -0.75
SMCO3-201ENST00000316048 RTN4Q9NQC3 1192 aaKnown RBP10.39□□□□□ -0.75
SMCO3-201ENST00000316048 U3KPZ7 1027 aaPredicted RBP10.35□□□□□ -0.75
SMCO3-201ENST00000316048 AMER1Q5JTC6 1135 aaPredicted RBP10.24□□□□□ -0.77
SMCO3-201ENST00000316048 SAMD1Q6SPF0 538 aaPredicted RBP10.23□□□□□ -0.77
SMCO3-201ENST00000316048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.19□□□□□ -0.78
SMCO3-201ENST00000316048 HNRNPUL2Q1KMD3 747 aaKnown RBP10.19□□□□□ -0.78
SMCO3-201ENST00000316048 ZNF219Q9P2Y4 722 aaPredicted RBP10.1□□□□□ -0.79
SMCO3-201ENST00000316048 SLC24A1O60721 1099 aa10.08□□□□□ -0.8
SMCO3-201ENST00000316048 MKRN4PQ13434 485 aaPredicted RBP9.98□□□□□ -0.81
SMCO3-201ENST00000316048 SPINK5Q9NQ38 1064 aaPredicted RBP9.97□□□□□ -0.81
SMCO3-201ENST00000316048 APLP2Q06481 763 aa9.94□□□□□ -0.82
SMCO3-201ENST00000316048 TRHP20396 242 aaPredicted RBP9.92□□□□□ -0.82
SMCO3-201ENST00000316048 SPDYE4A6NLX3 237 aa9.91□□□□□ -0.82
SMCO3-201ENST00000316048 POLA2Q14181 598 aa9.85□□□□□ -0.83
SMCO3-201ENST00000316048 RNF39Q9H2S5 420 aa9.85□□□□□ -0.83
SMCO3-201ENST00000316048 CAPN15O75808 1086 aa9.82□□□□□ -0.84
SMCO3-201ENST00000316048 PROM2Q8N271 834 aa9.81□□□□□ -0.84
SMCO3-201ENST00000316048 FBLN2P98095 1184 aa9.79□□□□□ -0.84
SMCO3-201ENST00000316048 FBXO3Q9UK99 471 aa9.77□□□□□ -0.84
SMCO3-201ENST00000316048 ABCB7O75027 752 aa9.76□□□□□ -0.85
SMCO3-201ENST00000316048 VASPP50552 380 aaPredicted RBP9.74□□□□□ -0.85
SMCO3-201ENST00000316048 IFNLR1Q8IU57 520 aaPredicted RBP9.69□□□□□ -0.86
SMCO3-201ENST00000316048 C1QBPQ07021 282 aaKnown RBP9.68□□□□□ -0.86
SMCO3-201ENST00000316048 ZBTB12Q9Y330 459 aaPredicted RBP9.58□□□□□ -0.88
SMCO3-201ENST00000316048 DSG3P32926 999 aa9.55□□□□□ -0.88
SMCO3-201ENST00000316048 PKD2Q13563 968 aa9.55□□□□□ -0.88
SMCO3-201ENST00000316048 OSCARQ8IYS5 282 aa9.54□□□□□ -0.88
SMCO3-201ENST00000316048 DCAF8L2P0C7V8 631 aa9.53□□□□□ -0.88
SMCO3-201ENST00000316048 PLCB2Q00722 1185 aa9.5□□□□□ -0.89
SMCO3-201ENST00000316048 ZNF692Q9BU19 519 aaPredicted RBP9.5□□□□□ -0.89
SMCO3-201ENST00000316048 SSUH2Q9Y2M2 353 aa9.44□□□□□ -0.9
SMCO3-201ENST00000316048 KLHL34Q8N239 644 aa9.44□□□□□ -0.9
SMCO3-201ENST00000316048 PABPN1Q86U42 306 aaKnown RBP eCLIP9.42□□□□□ -0.9
SMCO3-201ENST00000316048 SPDYE2BA6NHP3 402 aa9.41□□□□□ -0.9
SMCO3-201ENST00000316048 SPDYE6P0CI01 402 aa9.41□□□□□ -0.9
SMCO3-201ENST00000316048 SPDYE2Q495Y8 402 aa9.41□□□□□ -0.9
SMCO3-201ENST00000316048 SPOCK2Q92563 424 aa9.4□□□□□ -0.9
SMCO3-201ENST00000316048 HAP1P54257 671 aaPredicted RBP9.4□□□□□ -0.91
SMCO3-201ENST00000316048 PLCD3Q8N3E9 789 aa9.37□□□□□ -0.91
SMCO3-201ENST00000316048 ECM2O94769 699 aaPredicted RBP9.35□□□□□ -0.91
SMCO3-201ENST00000316048 STAG3Q9UJ98 1225 aa9.35□□□□□ -0.91
SMCO3-201ENST00000316048 NPM1P06748 294 aaKnown RBP eCLIP9.34□□□□□ -0.91
SMCO3-201ENST00000316048 MIER1Q8N108 512 aa9.33□□□□□ -0.92
SMCO3-201ENST00000316048 RGL2O15211 777 aa9.31□□□□□ -0.92
SMCO3-201ENST00000316048 CACNB1Q02641 598 aaPredicted RBP9.24□□□□□ -0.93
SMCO3-201ENST00000316048 BBXQ8WY36 941 aaPredicted RBP9.22□□□□□ -0.93
SMCO3-201ENST00000316048 CIZ1Q9ULV3 898 aaPredicted RBP9.22□□□□□ -0.93
SMCO3-201ENST00000316048 PAXIP1Q6ZW49 1069 aaPredicted RBP9.22□□□□□ -0.93
SMCO3-201ENST00000316048 CFAP44Q96MT7 982 aa9.2□□□□□ -0.94
SMCO3-201ENST00000316048 KDM2AQ9Y2K7 1162 aa9.19□□□□□ -0.94
SMCO3-201ENST00000316048 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.19□□□□□ -0.94
SMCO3-201ENST00000316048 VSIG10Q8N0Z9 540 aa9.17□□□□□ -0.94
SMCO3-201ENST00000316048 CHGAP10645 457 aaKnown RBP9.14□□□□□ -0.95
SMCO3-201ENST00000316048 PLEKHG5O94827 1062 aa9.14□□□□□ -0.95
SMCO3-201ENST00000316048 RNF25Q96BH1 459 aaPredicted RBP9.13□□□□□ -0.95
SMCO3-201ENST00000316048 ZBTB47Q9UFB7 747 aaPredicted RBP9.13□□□□□ -0.95
SMCO3-201ENST00000316048 PRKCSHP14314 528 aaPredicted RBP9.12□□□□□ -0.95
SMCO3-201ENST00000316048 BCANQ96GW7 911 aa9.11□□□□□ -0.95
SMCO3-201ENST00000316048 TSHZ2Q9NRE2 1034 aa9.11□□□□□ -0.95
SMCO3-201ENST00000316048 SPRYD3Q8NCJ5 442 aa9.08□□□□□ -0.96
SMCO3-201ENST00000316048 NUBP1P53384 320 aa9.07□□□□□ -0.96
SMCO3-201ENST00000316048 CLEC11AQ9Y240 323 aa9.05□□□□□ -0.96
SMCO3-201ENST00000316048 HS6ST3Q8IZP7 471 aa9.03□□□□□ -0.96
SMCO3-201ENST00000316048 TAOK2Q9UL54 1235 aa9.03□□□□□ -0.96
SMCO3-201ENST00000316048 SPDYE1Q8NFV5 336 aaPredicted RBP9.02□□□□□ -0.96
SMCO3-201ENST00000316048 CREBZFQ9NS37 354 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms