Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SNX9Q9Y5X1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 MMP23A-201ENST00000234610 1017 ntBASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 AC087499.1-201ENST00000418141 1075 ntBASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 AP000692.2-201ENST00000608391 879 ntBASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.63■□□□□ 0.89
SNX9Q9Y5X1 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 AC097488.1-201ENST00000507834 756 ntBASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.62■□□□□ 0.89
SNX9Q9Y5X1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 FITM1-202ENST00000559294 800 ntBASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 SLC25A1P4-201ENST00000567977 778 ntBASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 KRT8P9-201ENST00000558927 1449 ntBASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.61■□□□□ 0.89
SNX9Q9Y5X1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 CRYGFP-201ENST00000418459 633 ntBASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.6■□□□□ 0.89
SNX9Q9Y5X1 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms