Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP005242.2-201ENST00000580065 1175 ntBASIC19.44■□□□□ 0.7
LHX3Q9UBR4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 AC096733.2-201ENST00000609937 1394 ntBASIC19.44■□□□□ 0.7
LHX3Q9UBR4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LHX3Q9UBR4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 AC073912.3-201ENST00000624414 853 ntBASIC19.43■□□□□ 0.7
LHX3Q9UBR4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 AC007952.6-201ENST00000573168 2673 ntBASIC19.43■□□□□ 0.7
LHX3Q9UBR4 AC003957.1-201ENST00000625108 2673 ntBASIC19.43■□□□□ 0.7
LHX3Q9UBR4 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX3Q9UBR4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 MMP23A-201ENST00000234610 1017 ntBASIC19.42■□□□□ 0.7
LHX3Q9UBR4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 CRYGFP-201ENST00000418459 633 ntBASIC19.42■□□□□ 0.7
LHX3Q9UBR4 MFAP1P1-201ENST00000442257 1255 ntBASIC19.42■□□□□ 0.7
LHX3Q9UBR4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.42■□□□□ 0.7
LHX3Q9UBR4 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 TEX21P-204ENST00000641479 1693 ntBASIC19.42■□□□□ 0.7
LHX3Q9UBR4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX3Q9UBR4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 AC087499.1-201ENST00000418141 1075 ntBASIC19.41■□□□□ 0.7
LHX3Q9UBR4 TSPY21P-201ENST00000433481 731 ntBASIC19.41■□□□□ 0.7
LHX3Q9UBR4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 CKBP1-201ENST00000565489 1086 ntBASIC19.41■□□□□ 0.7
LHX3Q9UBR4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX3Q9UBR4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 PRSS44-201ENST00000515154 1146 ntBASIC19.4■□□□□ 0.7
LHX3Q9UBR4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.4■□□□□ 0.7
LHX3Q9UBR4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms