Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 IER3-202ENST00000376377 1350 ntBASIC21.57■■□□□ 1.04
VTA1Q9NP79 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
VTA1Q9NP79 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.57■■□□□ 1.04
VTA1Q9NP79 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21.56■■□□□ 1.04
VTA1Q9NP79 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
VTA1Q9NP79 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
VTA1Q9NP79 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 TSPY21P-201ENST00000433481 731 ntBASIC21.55■■□□□ 1.04
VTA1Q9NP79 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 MIR4674-201ENST00000582457 87 ntBASIC21.55■■□□□ 1.04
VTA1Q9NP79 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.55■■□□□ 1.04
VTA1Q9NP79 TCF3P1-201ENST00000423021 1937 ntBASIC21.55■■□□□ 1.04
VTA1Q9NP79 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.55■■□□□ 1.04
VTA1Q9NP79 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VTA1Q9NP79 AC092667.1-201ENST00000434301 2586 ntBASIC21.54■■□□□ 1.04
VTA1Q9NP79 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 TSPY23P-201ENST00000440136 739 ntBASIC21.54■■□□□ 1.04
VTA1Q9NP79 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.54■■□□□ 1.04
VTA1Q9NP79 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VTA1Q9NP79 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.53■■□□□ 1.04
VTA1Q9NP79 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
VTA1Q9NP79 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms