Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP42Q9H9J4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP42Q9H9J4 LINC01465-201ENST00000408887 1940 ntBASIC24.53■■□□□ 1.52
USP42Q9H9J4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
USP42Q9H9J4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC24.53■■□□□ 1.52
USP42Q9H9J4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 PP7080-204ENST00000510714 601 ntTSL 3 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.52■■□□□ 1.52
USP42Q9H9J4 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
USP42Q9H9J4 CD37-204ENST00000535669 1674 ntTSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
USP42Q9H9J4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 AC112907.2-201ENST00000448639 330 ntBASIC24.51■■□□□ 1.51
USP42Q9H9J4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 HYMAI.1-201ENST00000620949 238 ntBASIC24.51■■□□□ 1.51
USP42Q9H9J4 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP42Q9H9J4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC24.51■■□□□ 1.51
USP42Q9H9J4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC24.5■■□□□ 1.51
USP42Q9H9J4 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.5■■□□□ 1.51
USP42Q9H9J4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP42Q9H9J4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP42Q9H9J4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP42Q9H9J4 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 ZNF444P1-201ENST00000559497 298 ntBASIC24.49■■□□□ 1.51
USP42Q9H9J4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
USP42Q9H9J4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP42Q9H9J4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP42Q9H9J4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP42Q9H9J4 AL391422.3-201ENST00000603791 2761 ntBASIC24.48■■□□□ 1.51
USP42Q9H9J4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
USP42Q9H9J4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
USP42Q9H9J4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP42Q9H9J4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC24.48■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms