Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.9■□□□□ 0.94
CDT1Q9H211 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
CDT1Q9H211 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CDT1Q9H211 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.9■□□□□ 0.94
CDT1Q9H211 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.9■□□□□ 0.94
CDT1Q9H211 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.9■□□□□ 0.94
CDT1Q9H211 CKBP1-201ENST00000565489 1086 ntBASIC20.9■□□□□ 0.94
CDT1Q9H211 C2orf69P3-201ENST00000565542 1120 ntBASIC20.9■□□□□ 0.94
CDT1Q9H211 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
CDT1Q9H211 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.9■□□□□ 0.94
CDT1Q9H211 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDT1Q9H211 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.9■□□□□ 0.94
CDT1Q9H211 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.89■□□□□ 0.94
CDT1Q9H211 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDT1Q9H211 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDT1Q9H211 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDT1Q9H211 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
CDT1Q9H211 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDT1Q9H211 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDT1Q9H211 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDT1Q9H211 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.89■□□□□ 0.93
CDT1Q9H211 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.89■□□□□ 0.93
CDT1Q9H211 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CDT1Q9H211 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.88■□□□□ 0.93
CDT1Q9H211 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 TSPY14P-201ENST00000303979 915 ntBASIC20.88■□□□□ 0.93
CDT1Q9H211 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CDT1Q9H211 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.88■□□□□ 0.93
CDT1Q9H211 TSPY23P-201ENST00000440136 739 ntBASIC20.88■□□□□ 0.93
CDT1Q9H211 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.88■□□□□ 0.93
CDT1Q9H211 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CDT1Q9H211 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CDT1Q9H211 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDT1Q9H211 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.88■□□□□ 0.93
CDT1Q9H211 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDT1Q9H211 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 INGX-201ENST00000359239 846 ntBASIC20.87■□□□□ 0.93
CDT1Q9H211 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.87■□□□□ 0.93
CDT1Q9H211 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.87■□□□□ 0.93
CDT1Q9H211 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.87■□□□□ 0.93
CDT1Q9H211 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 PRSS44-201ENST00000515154 1146 ntBASIC20.87■□□□□ 0.93
CDT1Q9H211 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.87■□□□□ 0.93
CDT1Q9H211 EGLN1P1-201ENST00000531623 762 ntBASIC20.87■□□□□ 0.93
CDT1Q9H211 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.87■□□□□ 0.93
CDT1Q9H211 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
CDT1Q9H211 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.87■□□□□ 0.93
CDT1Q9H211 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CDT1Q9H211 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.87■□□□□ 0.93
CDT1Q9H211 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDT1Q9H211 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.87■□□□□ 0.93
CDT1Q9H211 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.86■□□□□ 0.93
CDT1Q9H211 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.86■□□□□ 0.93
CDT1Q9H211 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.86■□□□□ 0.93
CDT1Q9H211 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.86■□□□□ 0.93
CDT1Q9H211 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.86■□□□□ 0.93
CDT1Q9H211 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.86■□□□□ 0.93
CDT1Q9H211 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.86■□□□□ 0.93
CDT1Q9H211 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.86■□□□□ 0.93
CDT1Q9H211 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CDT1Q9H211 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms