Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.58■□□□□ 0.89
PAAF1Q9BRP4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 PKD1P6-201ENST00000343738 4769 ntBASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.58■□□□□ 0.88
PAAF1Q9BRP4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PAAF1Q9BRP4 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 AC141257.4-201ENST00000634557 245 ntBASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 AC136944.6-201ENST00000634818 245 ntBASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PAAF1Q9BRP4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 YBX1P2-201ENST00000489612 999 ntBASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 AC063952.2-201ENST00000498792 1227 ntBASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 PRSS44-201ENST00000515154 1146 ntBASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 AC022616.7-201ENST00000525383 220 ntBASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PAAF1Q9BRP4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 KRT8P45-201ENST00000414328 1447 ntBASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.54■□□□□ 0.88
PAAF1Q9BRP4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms