Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.76■□□□□ 0.91
CCDC42Q96M95 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 AC080038.1-201ENST00000611274 1154 ntBASIC20.76■□□□□ 0.91
CCDC42Q96M95 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 AC124283.5-201ENST00000624661 1809 ntBASIC20.76■□□□□ 0.91
CCDC42Q96M95 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 AL050303.2-201ENST00000619798 666 ntBASIC20.75■□□□□ 0.91
CCDC42Q96M95 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC42Q96M95 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC42Q96M95 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 AC006557.6-201ENST00000623071 864 ntBASIC20.74■□□□□ 0.91
CCDC42Q96M95 AC073111.5-205ENST00000641717 521 ntBASIC20.74■□□□□ 0.91
CCDC42Q96M95 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 AC007613.1-201ENST00000572811 2597 ntBASIC20.74■□□□□ 0.91
CCDC42Q96M95 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 AC009113.1-201ENST00000570267 2443 ntBASIC20.74■□□□□ 0.91
CCDC42Q96M95 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
CCDC42Q96M95 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC42Q96M95 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 RPS2P52-201ENST00000469610 820 ntBASIC20.73■□□□□ 0.91
CCDC42Q96M95 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC42Q96M95 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC42Q96M95 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms