Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS50Q96JG6 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
VPS50Q96JG6 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
VPS50Q96JG6 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS50Q96JG6 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS50Q96JG6 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS50Q96JG6 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS50Q96JG6 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS50Q96JG6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS50Q96JG6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 AC020916.1-201ENST00000587762 1774 ntBASIC18.81■□□□□ 0.6
VPS50Q96JG6 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 AL135905.2-201ENST00000584934 1404 ntBASIC18.81■□□□□ 0.6
VPS50Q96JG6 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS50Q96JG6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS50Q96JG6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 DPP3P2-201ENST00000416030 1696 ntBASIC18.8■□□□□ 0.6
VPS50Q96JG6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 MTDHP1-201ENST00000605323 784 ntBASIC18.8■□□□□ 0.6
VPS50Q96JG6 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VPS50Q96JG6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS50Q96JG6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 AC133681.1-201ENST00000465482 601 ntBASIC18.79■□□□□ 0.6
VPS50Q96JG6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.79■□□□□ 0.6
VPS50Q96JG6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS50Q96JG6 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms