Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGB4Q8WW32 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 AL512408.1-201ENST00000569378 2000 ntBASIC19.32■□□□□ 0.68
HMGB4Q8WW32 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 KRT8P11-201ENST00000409686 1436 ntBASIC19.32■□□□□ 0.68
HMGB4Q8WW32 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGB4Q8WW32 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGB4Q8WW32 SLC25A24-204ENST00000569674 2357 ntBASIC19.3■□□□□ 0.68
HMGB4Q8WW32 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 KRT18P38-201ENST00000449496 1282 ntBASIC19.3■□□□□ 0.68
HMGB4Q8WW32 PRSS44-201ENST00000515154 1146 ntBASIC19.3■□□□□ 0.68
HMGB4Q8WW32 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 AC008622.2-201ENST00000617006 1229 ntBASIC19.3■□□□□ 0.68
HMGB4Q8WW32 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 AC009237.14-201ENST00000609975 1594 ntBASIC19.3■□□□□ 0.68
HMGB4Q8WW32 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.3■□□□□ 0.68
HMGB4Q8WW32 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGB4Q8WW32 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB4Q8WW32 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGB4Q8WW32 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGB4Q8WW32 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HMGB4Q8WW32 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms