Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 HLA-G-202ENST00000376815 851 ntBASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 HLA-G-203ENST00000376818 1127 ntBASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 PNMA6B-201ENST00000538162 1200 ntBASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 AL161938.1-201ENST00000569833 2180 ntBASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 NOC2LP1-202ENST00000452600 2235 ntBASIC18.68■□□□□ 0.58
RNF111Q6ZNA4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 PTBP1P-201ENST00000554374 1601 ntBASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 CD99P1-205ENST00000527459 561 ntBASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 AL031963.3-201ENST00000606441 850 ntBASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF111Q6ZNA4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF111Q6ZNA4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms