Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 KRT18P16-201ENST00000510337 1294 ntBASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 WIZP1-201ENST00000531444 2299 ntBASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 FEM1AP3-201ENST00000403722 1741 ntBASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 AC104581.1-202ENST00000635932 2618 ntBASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LRIF1Q5T3J3 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 AC079598.2-202ENST00000546624 1451 ntBASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 IKBKGP1-201ENST00000612193 1073 ntBASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.16■□□□□ 0.5
LRIF1Q5T3J3 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 AC090164.3-201ENST00000610780 2143 ntBASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 AL121832.2-201ENST00000610979 668 ntBASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRIF1Q5T3J3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRIF1Q5T3J3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRIF1Q5T3J3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.14■□□□□ 0.5
LRIF1Q5T3J3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 AC083906.2-201ENST00000511578 360 ntBASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 HLA-B-256ENST00000639848 1089 ntBASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRIF1Q5T3J3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms