Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP39Q53GS9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP39Q53GS9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.59■□□□□ 0.73
USP39Q53GS9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
USP39Q53GS9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
USP39Q53GS9 AC092720.2-201ENST00000602388 1665 ntBASIC19.59■□□□□ 0.73
USP39Q53GS9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP39Q53GS9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP39Q53GS9 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
USP39Q53GS9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP39Q53GS9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.58■□□□□ 0.73
USP39Q53GS9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.58■□□□□ 0.73
USP39Q53GS9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP39Q53GS9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP39Q53GS9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.58■□□□□ 0.72
USP39Q53GS9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.58■□□□□ 0.72
USP39Q53GS9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.58■□□□□ 0.72
USP39Q53GS9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.58■□□□□ 0.72
USP39Q53GS9 AL138966.2-201ENST00000621997 464 ntBASIC19.58■□□□□ 0.72
USP39Q53GS9 AC010653.2-201ENST00000623505 997 ntBASIC19.58■□□□□ 0.72
USP39Q53GS9 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP39Q53GS9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP39Q53GS9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP39Q53GS9 AC099778.1-201ENST00000568593 1911 ntBASIC19.58■□□□□ 0.72
USP39Q53GS9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
USP39Q53GS9 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP39Q53GS9 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.58■□□□□ 0.72
USP39Q53GS9 PHGDH-210ENST00000641115 1638 ntBASIC19.58■□□□□ 0.72
USP39Q53GS9 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.58■□□□□ 0.72
USP39Q53GS9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.58■□□□□ 0.72
USP39Q53GS9 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
USP39Q53GS9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 AC096733.2-201ENST00000609937 1394 ntBASIC19.57■□□□□ 0.72
USP39Q53GS9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
USP39Q53GS9 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.57■□□□□ 0.72
USP39Q53GS9 TSPY5P-201ENST00000426936 936 ntBASIC19.57■□□□□ 0.72
USP39Q53GS9 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.57■□□□□ 0.72
USP39Q53GS9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 COX11P1-201ENST00000489116 835 ntBASIC19.57■□□□□ 0.72
USP39Q53GS9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.57■□□□□ 0.72
USP39Q53GS9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.57■□□□□ 0.72
USP39Q53GS9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 HLA-A-209ENST00000638375 975 ntBASIC19.57■□□□□ 0.72
USP39Q53GS9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP39Q53GS9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.57■□□□□ 0.72
USP39Q53GS9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.57■□□□□ 0.72
USP39Q53GS9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.56■□□□□ 0.72
USP39Q53GS9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 AC112907.3-201ENST00000577781 2400 ntBASIC19.56■□□□□ 0.72
USP39Q53GS9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 PCDHAC2-203ENST00000615316 3011 ntBASIC19.56■□□□□ 0.72
USP39Q53GS9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.56■□□□□ 0.72
USP39Q53GS9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
USP39Q53GS9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.56■□□□□ 0.72
USP39Q53GS9 AC008040.2-201ENST00000461049 708 ntBASIC19.56■□□□□ 0.72
USP39Q53GS9 YBX1P2-201ENST00000489612 999 ntBASIC19.56■□□□□ 0.72
USP39Q53GS9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.56■□□□□ 0.72
USP39Q53GS9 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.56■□□□□ 0.72
USP39Q53GS9 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.56■□□□□ 0.72
USP39Q53GS9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.56■□□□□ 0.72
USP39Q53GS9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.56■□□□□ 0.72
USP39Q53GS9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP39Q53GS9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.56■□□□□ 0.72
USP39Q53GS9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP39Q53GS9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USP39Q53GS9 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.55■□□□□ 0.72
USP39Q53GS9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP39Q53GS9 AL031133.1-201ENST00000406807 723 ntBASIC19.55■□□□□ 0.72
USP39Q53GS9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.55■□□□□ 0.72
USP39Q53GS9 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.55■□□□□ 0.72
USP39Q53GS9 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.55■□□□□ 0.72
USP39Q53GS9 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms