Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 RARRES2P10-201ENST00000564312 460 ntBASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PTCHD3Q3KNS1 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 AC113410.3-201ENST00000623366 203 ntBASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 AC104417.2-201ENST00000562989 1793 ntBASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PTCHD3Q3KNS1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 AP001412.1-201ENST00000608405 714 ntBASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PTCHD3Q3KNS1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 AC087289.5-201ENST00000586076 3175 ntBASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 AC004264.1-201ENST00000608354 794 ntBASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.8■□□□□ 0.6
PTCHD3Q3KNS1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms