Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.88■□□□□ 0.61
PKNOX1P55347 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PKNOX1P55347 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PKNOX1P55347 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.87■□□□□ 0.61
PKNOX1P55347 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PKNOX1P55347 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PKNOX1P55347 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PKNOX1P55347 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.87■□□□□ 0.61
PKNOX1P55347 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.87■□□□□ 0.61
PKNOX1P55347 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
PKNOX1P55347 MIR4758-201ENST00000577688 71 ntBASIC18.87■□□□□ 0.61
PKNOX1P55347 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PKNOX1P55347 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.86■□□□□ 0.61
PKNOX1P55347 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.86■□□□□ 0.61
PKNOX1P55347 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.86■□□□□ 0.61
PKNOX1P55347 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.86■□□□□ 0.61
PKNOX1P55347 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.86■□□□□ 0.61
PKNOX1P55347 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 AL121906.2-201ENST00000621597 723 ntBASIC18.86■□□□□ 0.61
PKNOX1P55347 HLA-B-256ENST00000639848 1089 ntBASIC18.86■□□□□ 0.61
PKNOX1P55347 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.86■□□□□ 0.61
PKNOX1P55347 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 CROCCP3-202ENST00000420820 1947 ntBASIC18.86■□□□□ 0.61
PKNOX1P55347 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PKNOX1P55347 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
PKNOX1P55347 AC141586.3-201ENST00000562166 1838 ntBASIC18.86■□□□□ 0.61
PKNOX1P55347 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PKNOX1P55347 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PKNOX1P55347 NCF1B-203ENST00000435988 1254 ntBASIC18.85■□□□□ 0.61
PKNOX1P55347 GUSBP6-202ENST00000438529 1198 ntBASIC18.85■□□□□ 0.61
PKNOX1P55347 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.85■□□□□ 0.61
PKNOX1P55347 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.85■□□□□ 0.61
PKNOX1P55347 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PKNOX1P55347 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.84■□□□□ 0.61
PKNOX1P55347 AC124283.5-201ENST00000624661 1809 ntBASIC18.84■□□□□ 0.61
PKNOX1P55347 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PKNOX1P55347 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.84■□□□□ 0.61
PKNOX1P55347 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms