Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXA1P55317 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.66■□□□□ 0.58
FOXA1P55317 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.65■□□□□ 0.58
FOXA1P55317 AC009113.1-201ENST00000570267 2443 ntBASIC18.65■□□□□ 0.58
FOXA1P55317 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXA1P55317 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXA1P55317 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXA1P55317 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
FOXA1P55317 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXA1P55317 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
FOXA1P55317 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXA1P55317 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.65■□□□□ 0.58
FOXA1P55317 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
FOXA1P55317 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
FOXA1P55317 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
FOXA1P55317 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
FOXA1P55317 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.64■□□□□ 0.58
FOXA1P55317 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
FOXA1P55317 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
FOXA1P55317 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 AC008687.6-201ENST00000596318 630 ntBASIC18.64■□□□□ 0.57
FOXA1P55317 AL109923.1-201ENST00000618799 583 ntBASIC18.64■□□□□ 0.57
FOXA1P55317 AL121829.2-201ENST00000620908 328 ntBASIC18.64■□□□□ 0.57
FOXA1P55317 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
FOXA1P55317 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
FOXA1P55317 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
FOXA1P55317 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
FOXA1P55317 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXA1P55317 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
FOXA1P55317 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 AC007613.1-201ENST00000572811 2597 ntBASIC18.63■□□□□ 0.57
FOXA1P55317 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXA1P55317 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.63■□□□□ 0.57
FOXA1P55317 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.63■□□□□ 0.57
FOXA1P55317 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.63■□□□□ 0.57
FOXA1P55317 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXA1P55317 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXA1P55317 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
FOXA1P55317 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms