Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 HYMAI.1-201ENST00000620949 238 ntBASIC22.27■■□□□ 1.16
HMGCS2P54868 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGCS2P54868 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC22.27■■□□□ 1.16
HMGCS2P54868 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.27■■□□□ 1.16
HMGCS2P54868 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
HMGCS2P54868 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
HMGCS2P54868 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
HMGCS2P54868 IPPK-202ENST00000375522 882 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGCS2P54868 FXN-203ENST00000396366 922 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGCS2P54868 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGCS2P54868 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGCS2P54868 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGCS2P54868 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGCS2P54868 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGCS2P54868 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC22.26■■□□□ 1.15
HMGCS2P54868 AC069148.1-201ENST00000608741 768 ntBASIC22.26■■□□□ 1.15
HMGCS2P54868 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
HMGCS2P54868 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGCS2P54868 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
HMGCS2P54868 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGCS2P54868 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 STARP1-201ENST00000397973 869 ntBASIC22.25■■□□□ 1.15
HMGCS2P54868 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGCS2P54868 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGCS2P54868 ZNF444P1-201ENST00000559497 298 ntBASIC22.25■■□□□ 1.15
HMGCS2P54868 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGCS2P54868 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 AC092667.1-201ENST00000434301 2586 ntBASIC22.25■■□□□ 1.15
HMGCS2P54868 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.25■■□□□ 1.15
HMGCS2P54868 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 AC104417.2-201ENST00000562989 1793 ntBASIC22.25■■□□□ 1.15
HMGCS2P54868 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGCS2P54868 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGCS2P54868 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
HMGCS2P54868 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 SPDYE15P-201ENST00000424157 909 ntBASIC22.24■■□□□ 1.15
HMGCS2P54868 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22.24■■□□□ 1.15
HMGCS2P54868 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGCS2P54868 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
HMGCS2P54868 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGCS2P54868 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGCS2P54868 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
HMGCS2P54868 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGCS2P54868 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 PKD1P6-201ENST00000343738 4769 ntBASIC22.23■■□□□ 1.15
HMGCS2P54868 LINC01311-201ENST00000565162 1445 ntBASIC22.23■■□□□ 1.15
HMGCS2P54868 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 LY6E-213ENST00000522528 606 ntTSL 3 BASIC22.23■■□□□ 1.15
HMGCS2P54868 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC22.23■■□□□ 1.15
HMGCS2P54868 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGCS2P54868 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGCS2P54868 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.22■■□□□ 1.15
HMGCS2P54868 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HMGCS2P54868 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC22.22■■□□□ 1.15
HMGCS2P54868 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms