Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CDX1P47902 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CDX1P47902 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CDX1P47902 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
CDX1P47902 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CDX1P47902 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.67■□□□□ 0.1
CDX1P47902 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
CDX1P47902 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.67■□□□□ 0.1
CDX1P47902 SERP1-205ENST00000487153 657 ntTSL 4 BASIC15.67■□□□□ 0.1
CDX1P47902 AC005829.2-201ENST00000571422 1056 ntBASIC15.67■□□□□ 0.1
CDX1P47902 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC15.67■□□□□ 0.1
CDX1P47902 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC15.67■□□□□ 0.1
CDX1P47902 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PLK5-205ENST00000642079 1969 ntBASIC15.67■□□□□ 0.1
CDX1P47902 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CDX1P47902 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
CDX1P47902 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CDX1P47902 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC15.67■□□□□ 0.1
CDX1P47902 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 AL390961.4-201ENST00000623958 2535 ntBASIC15.66■□□□□ 0.1
CDX1P47902 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 AC128676.1-201ENST00000454392 318 ntBASIC15.66■□□□□ 0.1
CDX1P47902 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.66■□□□□ 0.1
CDX1P47902 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.66■□□□□ 0.1
CDX1P47902 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 SOX15-203ENST00000570788 1093 ntBASIC15.66■□□□□ 0.1
CDX1P47902 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.66■□□□□ 0.1
CDX1P47902 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CDX1P47902 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CDX1P47902 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CDX1P47902 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC15.66■□□□□ 0.1
CDX1P47902 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CDX1P47902 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC15.65■□□□□ 0.1
CDX1P47902 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CDX1P47902 AC125437.2-201ENST00000625180 2167 ntBASIC15.65■□□□□ 0.1
CDX1P47902 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms