Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.87■□□□□ 0.61
SHMT2P34897 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.87■□□□□ 0.61
SHMT2P34897 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.87■□□□□ 0.61
SHMT2P34897 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.87■□□□□ 0.61
SHMT2P34897 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SHMT2P34897 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHMT2P34897 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.86■□□□□ 0.61
SHMT2P34897 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SHMT2P34897 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.86■□□□□ 0.61
SHMT2P34897 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.86■□□□□ 0.61
SHMT2P34897 MIR4497-201ENST00000583208 89 ntBASIC18.86■□□□□ 0.61
SHMT2P34897 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.86■□□□□ 0.61
SHMT2P34897 CD177P1-201ENST00000606252 935 ntBASIC18.86■□□□□ 0.61
SHMT2P34897 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
SHMT2P34897 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.86■□□□□ 0.61
SHMT2P34897 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHMT2P34897 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.85■□□□□ 0.61
SHMT2P34897 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.85■□□□□ 0.61
SHMT2P34897 KRT16P1-201ENST00000399124 1418 ntBASIC18.85■□□□□ 0.61
SHMT2P34897 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.85■□□□□ 0.61
SHMT2P34897 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
SHMT2P34897 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SHMT2P34897 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.85■□□□□ 0.61
SHMT2P34897 SNORA78-201ENST00000459373 127 ntBASIC18.85■□□□□ 0.61
SHMT2P34897 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.85■□□□□ 0.61
SHMT2P34897 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.85■□□□□ 0.61
SHMT2P34897 AL445675.2-201ENST00000620291 557 ntBASIC18.85■□□□□ 0.61
SHMT2P34897 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHMT2P34897 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.84■□□□□ 0.61
SHMT2P34897 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 FAM197Y1-201ENST00000421178 764 ntBASIC18.84■□□□□ 0.61
SHMT2P34897 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.84■□□□□ 0.61
SHMT2P34897 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.84■□□□□ 0.61
SHMT2P34897 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.84■□□□□ 0.61
SHMT2P34897 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.84■□□□□ 0.61
SHMT2P34897 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.84■□□□□ 0.61
SHMT2P34897 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHMT2P34897 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
SHMT2P34897 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHMT2P34897 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.84■□□□□ 0.61
SHMT2P34897 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHMT2P34897 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.83■□□□□ 0.61
SHMT2P34897 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHMT2P34897 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.83■□□□□ 0.61
SHMT2P34897 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHMT2P34897 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHMT2P34897 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHMT2P34897 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SHMT2P34897 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.83■□□□□ 0.6
SHMT2P34897 AL596275.1-201ENST00000423464 877 ntBASIC18.83■□□□□ 0.6
SHMT2P34897 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms