Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL2A1P02458 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC22.55■■□□□ 1.2
COL2A1P02458 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.55■■□□□ 1.2
COL2A1P02458 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.55■■□□□ 1.2
COL2A1P02458 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.55■■□□□ 1.2
COL2A1P02458 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC22.55■■□□□ 1.2
COL2A1P02458 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 AC005332.1-201ENST00000577698 1310 ntBASIC22.55■■□□□ 1.2
COL2A1P02458 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.55■■□□□ 1.2
COL2A1P02458 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.55■■□□□ 1.2
COL2A1P02458 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC22.55■■□□□ 1.2
COL2A1P02458 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.55■■□□□ 1.2
COL2A1P02458 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL2A1P02458 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 PCED1CP-201ENST00000419887 785 ntBASIC22.54■■□□□ 1.2
COL2A1P02458 SPDYE15P-201ENST00000424157 909 ntBASIC22.54■■□□□ 1.2
COL2A1P02458 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 HYMAI.1-201ENST00000620949 238 ntBASIC22.54■■□□□ 1.2
COL2A1P02458 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC22.54■■□□□ 1.2
COL2A1P02458 GOLGA6L5P-202ENST00000515341 1828 ntBASIC22.54■■□□□ 1.2
COL2A1P02458 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL2A1P02458 SNX5-210ENST00000481323 562 ntTSL 3 BASIC22.54■■□□□ 1.2
COL2A1P02458 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC22.54■■□□□ 1.2
COL2A1P02458 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC22.54■■□□□ 1.2
COL2A1P02458 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
COL2A1P02458 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC22.54■■□□□ 1.2
COL2A1P02458 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC22.53■■□□□ 1.2
COL2A1P02458 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.53■■□□□ 1.2
COL2A1P02458 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
COL2A1P02458 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.53■■□□□ 1.2
COL2A1P02458 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL2A1P02458 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.53■■□□□ 1.2
COL2A1P02458 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.53■■□□□ 1.2
COL2A1P02458 NMU-205ENST00000511469 756 ntTSL 3 BASIC22.53■■□□□ 1.2
COL2A1P02458 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.53■■□□□ 1.2
COL2A1P02458 GCSHP2-201ENST00000560971 527 ntBASIC22.53■■□□□ 1.2
COL2A1P02458 AC140113.3-201ENST00000605663 199 ntBASIC22.53■■□□□ 1.2
COL2A1P02458 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.53■■□□□ 1.2
COL2A1P02458 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL2A1P02458 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 IER3-202ENST00000376377 1350 ntBASIC22.52■■□□□ 1.2
COL2A1P02458 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.52■■□□□ 1.2
COL2A1P02458 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC22.52■■□□□ 1.2
COL2A1P02458 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
COL2A1P02458 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.52■■□□□ 1.2
COL2A1P02458 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
COL2A1P02458 AC112907.2-201ENST00000448639 330 ntBASIC22.52■■□□□ 1.2
COL2A1P02458 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC22.52■■□□□ 1.2
COL2A1P02458 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
COL2A1P02458 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL2A1P02458 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
COL2A1P02458 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.51■■□□□ 1.19
COL2A1P02458 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.51■■□□□ 1.19
COL2A1P02458 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 GPAT2P1-201ENST00000444924 1672 ntBASIC22.51■■□□□ 1.19
COL2A1P02458 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC22.51■■□□□ 1.19
COL2A1P02458 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
COL2A1P02458 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 LY6E-213ENST00000522528 606 ntTSL 3 BASIC22.51■■□□□ 1.19
COL2A1P02458 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC22.51■■□□□ 1.19
COL2A1P02458 AL136038.3-201ENST00000561909 1096 ntBASIC22.51■■□□□ 1.19
COL2A1P02458 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 LINC01006-201ENST00000333319 2292 ntBASIC22.51■■□□□ 1.19
COL2A1P02458 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
COL2A1P02458 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.51■■□□□ 1.19
COL2A1P02458 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms