Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PWWP2AP1-201ENST00000429776 2273 ntBASIC23.26■■□□□ 1.31
COL1A1P02452 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
COL1A1P02452 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL1A1P02452 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC23.26■■□□□ 1.31
COL1A1P02452 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.26■■□□□ 1.31
COL1A1P02452 AL121956.5-201ENST00000625261 221 ntBASIC23.26■■□□□ 1.31
COL1A1P02452 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
COL1A1P02452 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC23.26■■□□□ 1.31
COL1A1P02452 TREX1-205ENST00000625293 1783 ntBASIC23.26■■□□□ 1.31
COL1A1P02452 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.26■■□□□ 1.31
COL1A1P02452 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC23.26■■□□□ 1.31
COL1A1P02452 TBC1D3P2-202ENST00000577902 1649 ntBASIC23.26■■□□□ 1.31
COL1A1P02452 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL1A1P02452 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 ANKRD20A18P-201ENST00000359341 492 ntBASIC23.25■■□□□ 1.31
COL1A1P02452 GXYLT1P6-201ENST00000456472 1187 ntBASIC23.25■■□□□ 1.31
COL1A1P02452 AC092647.4-201ENST00000457211 535 ntBASIC23.25■■□□□ 1.31
COL1A1P02452 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC23.25■■□□□ 1.31
COL1A1P02452 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL1A1P02452 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.25■■□□□ 1.31
COL1A1P02452 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC23.25■■□□□ 1.31
COL1A1P02452 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC23.25■■□□□ 1.31
COL1A1P02452 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.25■■□□□ 1.31
COL1A1P02452 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL1A1P02452 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 COPS8-203ENST00000409334 794 ntTSL 5 BASIC23.24■■□□□ 1.31
COL1A1P02452 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
COL1A1P02452 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.24■■□□□ 1.31
COL1A1P02452 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC23.24■■□□□ 1.31
COL1A1P02452 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC23.24■■□□□ 1.31
COL1A1P02452 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.24■■□□□ 1.31
COL1A1P02452 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
COL1A1P02452 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL1A1P02452 TSPY5P-201ENST00000426936 936 ntBASIC23.24■■□□□ 1.31
COL1A1P02452 TSPY17P-201ENST00000450329 467 ntBASIC23.24■■□□□ 1.31
COL1A1P02452 TOLLIP-AS1-201ENST00000530897 939 ntBASIC23.24■■□□□ 1.31
COL1A1P02452 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.24■■□□□ 1.31
COL1A1P02452 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
COL1A1P02452 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC23.23■■□□□ 1.31
COL1A1P02452 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC23.23■■□□□ 1.31
COL1A1P02452 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.23■■□□□ 1.31
COL1A1P02452 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
COL1A1P02452 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.23■■□□□ 1.31
COL1A1P02452 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC23.23■■□□□ 1.31
COL1A1P02452 AL512604.3-201ENST00000569583 964 ntBASIC23.23■■□□□ 1.31
COL1A1P02452 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC23.23■■□□□ 1.31
COL1A1P02452 AC141257.4-201ENST00000634557 245 ntBASIC23.23■■□□□ 1.31
COL1A1P02452 AC136944.6-201ENST00000634818 245 ntBASIC23.23■■□□□ 1.31
COL1A1P02452 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC23.23■■□□□ 1.31
COL1A1P02452 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL1A1P02452 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.22■■□□□ 1.31
COL1A1P02452 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.22■■□□□ 1.31
COL1A1P02452 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC23.22■■□□□ 1.31
COL1A1P02452 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
COL1A1P02452 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.22■■□□□ 1.31
COL1A1P02452 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
COL1A1P02452 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL1A1P02452 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.22■■□□□ 1.31
COL1A1P02452 KRT8P45-201ENST00000414328 1447 ntBASIC23.22■■□□□ 1.31
COL1A1P02452 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.22■■□□□ 1.31
COL1A1P02452 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC23.22■■□□□ 1.31
COL1A1P02452 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.22■■□□□ 1.31
COL1A1P02452 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC23.22■■□□□ 1.31
COL1A1P02452 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC23.22■■□□□ 1.31
COL1A1P02452 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms