Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
SGCEO43556 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SGCEO43556 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SGCEO43556 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
SGCEO43556 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.02■□□□□ 0.32
SGCEO43556 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.02■□□□□ 0.32
SGCEO43556 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.02■□□□□ 0.32
SGCEO43556 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SGCEO43556 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SGCEO43556 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.02■□□□□ 0.31
SGCEO43556 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SGCEO43556 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SGCEO43556 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.01■□□□□ 0.31
SGCEO43556 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 Z82202.1-201ENST00000623446 1880 ntBASIC17.01■□□□□ 0.31
SGCEO43556 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.01■□□□□ 0.31
SGCEO43556 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
SGCEO43556 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
SGCEO43556 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SGCEO43556 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.01■□□□□ 0.31
SGCEO43556 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.01■□□□□ 0.31
SGCEO43556 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.01■□□□□ 0.31
SGCEO43556 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
SGCEO43556 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SGCEO43556 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SGCEO43556 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17■□□□□ 0.31
SGCEO43556 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 NBPF21P-201ENST00000425093 1451 ntBASIC17■□□□□ 0.31
SGCEO43556 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SGCEO43556 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17■□□□□ 0.31
SGCEO43556 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17■□□□□ 0.31
SGCEO43556 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17■□□□□ 0.31
SGCEO43556 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17■□□□□ 0.31
SGCEO43556 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17■□□□□ 0.31
SGCEO43556 MTDHP1-201ENST00000605323 784 ntBASIC17■□□□□ 0.31
SGCEO43556 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC17■□□□□ 0.31
SGCEO43556 Six3os1_6.1-201ENST00000620790 196 ntBASIC17■□□□□ 0.31
SGCEO43556 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17■□□□□ 0.31
SGCEO43556 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SGCEO43556 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SGCEO43556 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.99■□□□□ 0.31
SGCEO43556 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 ZNF815P-204ENST00000434898 1737 ntBASIC16.99■□□□□ 0.31
SGCEO43556 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC16.99■□□□□ 0.31
SGCEO43556 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
SGCEO43556 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
SGCEO43556 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 AC233263.1-201ENST00000578059 224 ntBASIC16.99■□□□□ 0.31
SGCEO43556 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.99■□□□□ 0.31
SGCEO43556 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SGCEO43556 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms