Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CLDN3O15551 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 UNC93B2-201ENST00000285383 730 ntBASIC21.07■□□□□ 0.96
CLDN3O15551 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CLDN3O15551 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 AC004951.3-201ENST00000418645 1148 ntBASIC21.07■□□□□ 0.96
CLDN3O15551 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.07■□□□□ 0.96
CLDN3O15551 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.07■□□□□ 0.96
CLDN3O15551 AC130371.2-201ENST00000619443 611 ntBASIC21.07■□□□□ 0.96
CLDN3O15551 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.07■□□□□ 0.96
CLDN3O15551 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.07■□□□□ 0.96
CLDN3O15551 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.07■□□□□ 0.96
CLDN3O15551 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLDN3O15551 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.06■□□□□ 0.96
CLDN3O15551 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CLDN3O15551 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CLDN3O15551 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 RBM17P1-201ENST00000453646 1190 ntBASIC21.06■□□□□ 0.96
CLDN3O15551 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.06■□□□□ 0.96
CLDN3O15551 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.06■□□□□ 0.96
CLDN3O15551 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.06■□□□□ 0.96
CLDN3O15551 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.06■□□□□ 0.96
CLDN3O15551 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.06■□□□□ 0.96
CLDN3O15551 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.06■□□□□ 0.96
CLDN3O15551 AC011298.2-201ENST00000617989 482 ntBASIC21.06■□□□□ 0.96
CLDN3O15551 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CLDN3O15551 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLDN3O15551 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CLDN3O15551 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN3O15551 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.05■□□□□ 0.96
CLDN3O15551 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN3O15551 BX088651.1-201ENST00000540551 451 ntBASIC21.05■□□□□ 0.96
CLDN3O15551 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.05■□□□□ 0.96
CLDN3O15551 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CLDN3O15551 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.05■□□□□ 0.96
CLDN3O15551 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLDN3O15551 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CLDN3O15551 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
CLDN3O15551 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN3O15551 DERL1-203ENST00000419562 918 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN3O15551 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.04■□□□□ 0.96
CLDN3O15551 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.04■□□□□ 0.96
CLDN3O15551 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.04■□□□□ 0.96
CLDN3O15551 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.04■□□□□ 0.96
CLDN3O15551 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CLDN3O15551 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.04■□□□□ 0.96
CLDN3O15551 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLDN3O15551 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CLDN3O15551 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CLDN3O15551 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.03■□□□□ 0.96
CLDN3O15551 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CLDN3O15551 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.03■□□□□ 0.96
CLDN3O15551 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 AC091390.4-202ENST00000476426 537 ntBASIC21.03■□□□□ 0.96
CLDN3O15551 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
CLDN3O15551 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms