Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
SOX1O00570 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SOX1O00570 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SOX1O00570 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX1O00570 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.53■□□□□ 0.88
SOX1O00570 IGHV3-47-201ENST00000425060 335 ntBASIC20.53■□□□□ 0.88
SOX1O00570 HLA-J-202ENST00000469281 1241 ntBASIC20.53■□□□□ 0.88
SOX1O00570 AC093909.1-201ENST00000504731 1122 ntBASIC20.53■□□□□ 0.88
SOX1O00570 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.53■□□□□ 0.88
SOX1O00570 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.53■□□□□ 0.88
SOX1O00570 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.53■□□□□ 0.88
SOX1O00570 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
SOX1O00570 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.53■□□□□ 0.88
SOX1O00570 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.53■□□□□ 0.88
SOX1O00570 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.53■□□□□ 0.88
SOX1O00570 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SOX1O00570 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SOX1O00570 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SOX1O00570 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX1O00570 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX1O00570 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 AF186996.4-201ENST00000467186 377 ntBASIC20.52■□□□□ 0.88
SOX1O00570 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC20.52■□□□□ 0.88
SOX1O00570 HLA-J-203ENST00000494367 1087 ntBASIC20.52■□□□□ 0.88
SOX1O00570 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX1O00570 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SOX1O00570 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.52■□□□□ 0.88
SOX1O00570 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.52■□□□□ 0.88
SOX1O00570 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SOX1O00570 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.52■□□□□ 0.87
SOX1O00570 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SOX1O00570 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SOX1O00570 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.52■□□□□ 0.87
SOX1O00570 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SOX1O00570 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.51■□□□□ 0.87
SOX1O00570 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SOX1O00570 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.51■□□□□ 0.87
SOX1O00570 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.51■□□□□ 0.87
SOX1O00570 AC004967.1-201ENST00000453589 447 ntBASIC20.51■□□□□ 0.87
SOX1O00570 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SOX1O00570 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.51■□□□□ 0.87
SOX1O00570 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SOX1O00570 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.51■□□□□ 0.87
SOX1O00570 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
SOX1O00570 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SOX1O00570 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.5■□□□□ 0.87
SOX1O00570 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 AL035633.1-201ENST00000406139 838 ntBASIC20.5■□□□□ 0.87
SOX1O00570 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 AC139887.3-201ENST00000568585 713 ntBASIC20.5■□□□□ 0.87
SOX1O00570 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 AL136038.4-201ENST00000603606 1261 ntBASIC20.5■□□□□ 0.87
SOX1O00570 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.5■□□□□ 0.87
SOX1O00570 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
SOX1O00570 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.5■□□□□ 0.87
SOX1O00570 KRT8P11-201ENST00000409686 1436 ntBASIC20.5■□□□□ 0.87
SOX1O00570 KRT16P6-202ENST00000425692 1426 ntBASIC20.5■□□□□ 0.87
SOX1O00570 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.5■□□□□ 0.87
SOX1O00570 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SOX1O00570 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SOX1O00570 PHGDH-210ENST00000641115 1638 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms