Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
TRAV40A0A0B4J280 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 AL445228.2-201ENST00000605589 952 ntBASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 AC116562.4-202ENST00000641738 218 ntBASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
TRAV40A0A0B4J280 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 INGX-201ENST00000359239 846 ntBASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 FAM87A-204ENST00000613235 858 ntBASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.68■□□□□ 0.1
TRAV40A0A0B4J280 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 KRT18P35-201ENST00000510488 1269 ntBASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 AL590326.2-201ENST00000625139 305 ntBASIC15.67■□□□□ 0.1
TRAV40A0A0B4J280 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms