Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC144BQ3MJ40 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 SCARNA15-201ENST00000607520 4325 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RNU6-28P-201ENST00000362378 107 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 MT-TC-201ENST00000387405 66 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL035079.1-201ENST00000405210 287 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RPS16P5-201ENST00000406501 404 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RPL31P45-201ENST00000419532 356 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RPL36AP10-201ENST00000421785 322 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 MRPL48P1-201ENST00000445390 636 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC002381.1-201ENST00000447049 280 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL354714.3-201ENST00000447284 493 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC073264.2-201ENST00000448886 166 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC005297.2-201ENST00000450430 606 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL513533.1-201ENST00000453728 415 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 HMGB1P15-201ENST00000453854 435 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RNA5SP103-201ENST00000459503 118 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RN7SL443P-201ENST00000464331 290 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC146507.1-201ENST00000468335 354 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RPL21P103-201ENST00000479921 488 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 OR5H5P-201ENST00000503164 928 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC097173.1-201ENST00000505862 819 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RNA5SP464-201ENST00000516251 108 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC091042.1-201ENST00000579213 173 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AP001180.3-201ENST00000582221 145 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC068790.4-201ENST00000602474 263 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC103710.4-201ENST00000609301 899 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AL121873.1-201ENST00000616013 524 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC098679.4-201ENST00000624241 654 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 AC126323.6-202ENST00000568092 3511 ntBASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC144BQ3MJ40 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.71□□□□□ -1.49
CCDC144BQ3MJ40 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.71□□□□□ -1.49
CCDC144BQ3MJ40 SALL4P2-201ENST00000423288 2910 ntBASIC5.71□□□□□ -1.49
CCDC144BQ3MJ40 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
CCDC144BQ3MJ40 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC144BQ3MJ40 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 AL161781.1-201ENST00000354277 403 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 RNY4P24-201ENST00000362735 96 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 RN7SKP113-201ENST00000363891 295 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 PGBD4P8-201ENST00000412993 562 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 AF186996.5-201ENST00000418098 904 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 RPS27AP12-201ENST00000429552 465 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 RPS3AP54-201ENST00000435535 734 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 AL357520.1-201ENST00000441557 453 ntBASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC144BQ3MJ40 ST13P20-201ENST00000447996 1065 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms