Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RPL21P132-201ENST00000331267 462 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 NPM1P17-201ENST00000479221 602 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 RN7SKP219-201ENST00000516825 296 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 AC009163.5-201ENST00000575421 637 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 AC004972.1-201ENST00000623934 2209 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A3P12111 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A3P12111 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A3P12111 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 SNORD114-30-201ENST00000364448 72 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.08□□□□□ -1.92
COL6A3P12111 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A3P12111 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.08□□□□□ -1.92
COL6A3P12111 SNRPGP9-201ENST00000456025 225 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 AC012123.2-201ENST00000485809 248 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 OR5H5P-201ENST00000503164 928 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.08□□□□□ -1.92
COL6A3P12111 AL133457.1-201ENST00000564251 987 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 MIR6779-201ENST00000617283 64 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
COL6A3P12111 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL6A3P12111 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL6A3P12111 ETF1P3-201ENST00000430422 1160 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 HMGB1P48-201ENST00000446155 598 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.08□□□□□ -1.92
COL6A3P12111 PRDX3P4-201ENST00000470828 747 ntBASIC3.08□□□□□ -1.92
COL6A3P12111 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.08□□□□□ -1.92
COL6A3P12111 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.07□□□□□ -1.92
COL6A3P12111 SEPT7P8-201ENST00000413308 775 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 RPL23AP82-202ENST00000427528 469 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL6A3P12111 CENPBD1P1-201ENST00000464061 469 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.07□□□□□ -1.92
COL6A3P12111 AC008638.3-201ENST00000603341 463 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC3.07□□□□□ -1.92
COL6A3P12111 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL6A3P12111 AL590290.1-201ENST00000405336 380 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 RNU4-26P-201ENST00000410270 107 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 EIF4EP1-201ENST00000422311 642 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 OR2AS1P-201ENST00000427827 319 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.07□□□□□ -1.92
COL6A3P12111 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.07□□□□□ -1.92
COL6A3P12111 CKS1BP1-201ENST00000555221 240 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.07□□□□□ -1.92
COL6A3P12111 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC3.07□□□□□ -1.92
COL6A3P12111 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
COL6A3P12111 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 IPO8P1-201ENST00000455509 3109 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL6A3P12111 Z95114.1-201ENST00000624264 14574 ntBASIC3.07□□□□□ -1.92
COL6A3P12111 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC3.06□□□□□ -1.92
COL6A3P12111 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 RPS26P47-201ENST00000427219 348 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC3.06□□□□□ -1.92
COL6A3P12111 AC004057.1-201ENST00000485827 348 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 RPS26P15-201ENST00000488067 348 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.06□□□□□ -1.92
COL6A3P12111 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.06□□□□□ -1.92
COL6A3P12111 AC010480.1-201ENST00000624823 684 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.06□□□□□ -1.92
COL6A3P12111 RNU6-618P-201ENST00000363518 112 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 SNORA25.9-201ENST00000365087 128 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 RNA5SP21-201ENST00000410917 96 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 MRPS35P3-201ENST00000603189 709 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 AC007318.2-201ENST00000620999 243 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.06□□□□□ -1.92
COL6A3P12111 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL6A3P12111 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.06□□□□□ -1.92
COL6A3P12111 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.06□□□□□ -1.92
COL6A3P12111 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.06□□□□□ -1.92
COL6A3P12111 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL6A3P12111 AC000403.1-201ENST00000613696 3585 ntBASIC3.05□□□□□ -1.92
COL6A3P12111 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms