Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 SYF2P1-201ENST00000550658 413 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VMP1Q96GC9 AL121603.1-201ENST00000553815 142 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VMP1Q96GC9 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
VMP1Q96GC9 MIR4666A-201ENST00000580160 79 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 KPNA2P3-201ENST00000584190 848 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 AC090330.1-201ENST00000588646 764 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 AP003973.1-201ENST00000604639 691 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 AP000238.1-201ENST00000608759 426 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VMP1Q96GC9 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 MTND4P10-201ENST00000446199 1363 ntBASIC4.12□□□□□ -1.75
VMP1Q96GC9 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.12□□□□□ -1.75
VMP1Q96GC9 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
VMP1Q96GC9 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 RNU6-821P-201ENST00000390995 107 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AL133264.1-201ENST00000407157 562 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RNU4-25P-201ENST00000410569 230 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RNA5SP306-201ENST00000411087 107 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 OR8G2P-201ENST00000412796 908 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 MTCO3P12-201ENST00000416718 547 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 C4BPAP2-201ENST00000428434 478 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RPS29P17-201ENST00000430795 166 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AL132765.1-201ENST00000434165 553 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC073143.1-201ENST00000436316 395 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC241584.1-201ENST00000438469 1241 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC114495.1-201ENST00000441274 436 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 DDX39BP2-208ENST00000453923 258 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RPL7P1-201ENST00000468161 747 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RN7SL330P-201ENST00000469709 307 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 NAMPTP2-201ENST00000505629 1115 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 snoZ278.1-201ENST00000517059 112 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC087894.1-201ENST00000538359 518 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 VN1R87P-201ENST00000596706 487 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC020914.4-201ENST00000597690 277 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC079587.1-201ENST00000603846 277 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC113403.1-201ENST00000604910 193 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 BNIP3P19-201ENST00000605397 577 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 MIR432-201ENST00000606207 94 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 uc_338.13-201ENST00000618243 179 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 MIR6891-201ENST00000618788 93 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.11□□□□□ -1.75
VMP1Q96GC9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 AC024560.2-201ENST00000507981 1497 ntBASIC4.11□□□□□ -1.75
VMP1Q96GC9 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VMP1Q96GC9 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 HSPA8P1-201ENST00000425843 1833 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC008033.1-201ENST00000216407 1162 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 RNU5B-4P-201ENST00000363508 111 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 SNORA62-201ENST00000365493 153 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC234772.1-201ENST00000377927 937 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 SNORA40.4-201ENST00000390971 128 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 RPS20P14-201ENST00000412545 360 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 RPS7P15-201ENST00000415804 584 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 MTCYBP32-201ENST00000427945 1084 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 PRELID3BP10-201ENST00000431957 584 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 CBX1P1-201ENST00000440184 427 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 TPT1P12-201ENST00000448968 492 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 RPL7P52-201ENST00000449200 742 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VMP1Q96GC9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.1□□□□□ -1.75
VMP1Q96GC9 HMGB1P15-201ENST00000453854 435 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 PABPC1P3-201ENST00000469174 459 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 VPS26AP1-201ENST00000483197 979 ntBASIC4.1□□□□□ -1.75
VMP1Q96GC9 AC092902.1-201ENST00000486999 259 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms