Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AP001189.2-201ENST00000527320 189 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MTCO2P15-201ENST00000532655 656 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 HIGD1AP17-201ENST00000554576 276 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC090695.1-201ENST00000561269 1222 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL132657.2-201ENST00000564417 358 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC093249.4-201ENST00000564755 259 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC138915.2-201ENST00000569776 97 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MIR5699-201ENST00000578903 90 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MIR3124-201ENST00000582636 67 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC022069.1-201ENST00000582910 658 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 SLC25A36P1-201ENST00000590111 465 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 DUXAP3-201ENST00000603616 594 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AL160281.1-201ENST00000605307 311 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC131235.4-201ENST00000609288 620 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC007497.1-201ENST00000610421 561 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 uc_338.32-201ENST00000615087 172 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC231759.1-201ENST00000616455 597 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC120349.3-201ENST00000624377 529 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 LDHA-225ENST00000625635 141 ntTSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC116618.1-201ENST00000634617 774 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 MIR4496-201ENST00000635896 61 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 AC125257.1-201ENST00000560400 2930 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 XPOTP1-201ENST00000443317 2398 ntBASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
PDLIM3Q53GG5 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNU5D-1-201ENST00000363299 116 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNU6-115P-201ENST00000364310 107 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNU4-28P-201ENST00000364739 141 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SNORA70F-201ENST00000384142 135 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNU6-83P-201ENST00000384568 112 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 HMGB1P49-201ENST00000418882 569 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SKP1P3-201ENST00000429280 487 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL513175.1-201ENST00000431492 780 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC093414.1-201ENST00000434712 514 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC114755.5-201ENST00000447760 831 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC011276.1-201ENST00000469688 323 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RPL7L1P8-201ENST00000469911 741 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC021146.8-201ENST00000507455 733 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 MRPS33P2-201ENST00000507850 322 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNA5SP446-201ENST00000515955 82 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 RNU1-6P-201ENST00000516290 144 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SOD1P3-201ENST00000518682 454 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC090281.1-201ENST00000523019 276 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AP001880.2-201ENST00000538233 448 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 CBX3P5-201ENST00000552017 521 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AGGF1P6-201ENST00000569213 976 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 AC022916.3-201ENST00000592961 742 ntBASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC3.79□□□□□ -1.8
PDLIM3Q53GG5 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms