Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
MSH5O43196 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 MARK2P10-201ENST00000454959 1437 ntBASIC10.4□□□□□ -0.75
MSH5O43196 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 OR4K17-202ENST00000641386 4886 ntAPPRIS P1 BASIC10.4□□□□□ -0.75
MSH5O43196 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
MSH5O43196 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC10.4□□□□□ -0.75
MSH5O43196 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC10.39□□□□□ -0.75
MSH5O43196 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC10.39□□□□□ -0.75
MSH5O43196 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC10.39□□□□□ -0.75
MSH5O43196 SAMMSON-222ENST00000641901 2727 ntBASIC10.39□□□□□ -0.75
MSH5O43196 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 RNU6-647P-201ENST00000364243 107 ntBASIC10.39□□□□□ -0.75
MSH5O43196 RNU6-827P-201ENST00000365553 106 ntBASIC10.39□□□□□ -0.75
MSH5O43196 MIR146B-201ENST00000365699 73 ntBASIC10.39□□□□□ -0.75
MSH5O43196 AC009237.9-201ENST00000414800 347 ntBASIC10.39□□□□□ -0.75
MSH5O43196 RPS23P10-201ENST00000416185 486 ntBASIC10.39□□□□□ -0.75
MSH5O43196 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC10.39□□□□□ -0.75
MSH5O43196 KDM4A-AS1-205ENST00000453015 647 ntTSL 2 BASIC10.39□□□□□ -0.75
MSH5O43196 RN7SL870P-201ENST00000460111 296 ntBASIC10.39□□□□□ -0.75
MSH5O43196 RN7SL776P-201ENST00000493390 268 ntBASIC10.39□□□□□ -0.75
MSH5O43196 AC113208.1-201ENST00000497944 318 ntBASIC10.39□□□□□ -0.75
MSH5O43196 AC233724.10-201ENST00000510454 409 ntBASIC10.39□□□□□ -0.75
MSH5O43196 RPL10P19-201ENST00000519013 301 ntBASIC10.39□□□□□ -0.75
MSH5O43196 Metazoa_SRP.29-201ENST00000616220 280 ntBASIC10.39□□□□□ -0.75
MSH5O43196 AL445567.2-201ENST00000618935 498 ntBASIC10.39□□□□□ -0.75
MSH5O43196 PCBP1-AS1-322ENST00000628147 553 ntTSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 ANGPT2-203ENST00000523120 2997 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC10.39□□□□□ -0.75
MSH5O43196 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.75
MSH5O43196 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC10.39□□□□□ -0.75
MSH5O43196 BTBD10P1-201ENST00000549824 1352 ntBASIC10.39□□□□□ -0.75
MSH5O43196 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 PANDAR-201ENST00000629595 1506 ntBASIC10.38□□□□□ -0.75
MSH5O43196 MAGT1-205ENST00000618282 2788 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 RACGAP1P-201ENST00000550663 1879 ntBASIC10.38□□□□□ -0.75
MSH5O43196 DYNC2LI1-203ENST00000398823 2903 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 DPH6-202ENST00000440392 3648 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 AL589993.1-201ENST00000407450 2524 ntBASIC10.38□□□□□ -0.75
MSH5O43196 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 ERG-210ENST00000442448 5034 ntTSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 RN7SKP189-201ENST00000365042 330 ntBASIC10.38□□□□□ -0.75
MSH5O43196 Y_RNA.313-201ENST00000365095 103 ntBASIC10.38□□□□□ -0.75
MSH5O43196 RNU6-317P-201ENST00000384031 107 ntBASIC10.38□□□□□ -0.75
MSH5O43196 Y_RNA.534-201ENST00000384599 112 ntBASIC10.38□□□□□ -0.75
MSH5O43196 SNORA8.3-201ENST00000384679 139 ntBASIC10.38□□□□□ -0.75
MSH5O43196 HCG25-217ENST00000422366 702 ntTSL 3 BASIC10.38□□□□□ -0.75
MSH5O43196 AC245047.8-201ENST00000456455 284 ntBASIC10.38□□□□□ -0.75
MSH5O43196 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC10.38□□□□□ -0.75
MSH5O43196 SUMO2P6-201ENST00000505273 288 ntBASIC10.38□□□□□ -0.75
MSH5O43196 RNA5SP165-201ENST00000517142 115 ntBASIC10.38□□□□□ -0.75
MSH5O43196 AC008694.2-201ENST00000517591 306 ntBASIC10.38□□□□□ -0.75
MSH5O43196 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC10.38□□□□□ -0.75
MSH5O43196 AC022884.3-201ENST00000579571 248 ntBASIC10.38□□□□□ -0.75
MSH5O43196 AC011193.2-201ENST00000582638 367 ntBASIC10.38□□□□□ -0.75
MSH5O43196 AL136985.2-201ENST00000607372 535 ntBASIC10.38□□□□□ -0.75
MSH5O43196 MIR8089-201ENST00000620165 82 ntBASIC10.38□□□□□ -0.75
MSH5O43196 AC016582.3-206ENST00000636547 207 ntBASIC10.38□□□□□ -0.75
MSH5O43196 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 AC114774.1-201ENST00000507410 1770 ntBASIC10.38□□□□□ -0.75
MSH5O43196 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 MAP3K8-202ENST00000375321 2518 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 ST7-221ENST00000465133 2155 ntTSL 5 BASIC10.38□□□□□ -0.75
MSH5O43196 LRP1-201ENST00000243077 14897 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
MSH5O43196 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC10.38□□□□□ -0.75
MSH5O43196 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
MSH5O43196 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
MSH5O43196 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC10.37□□□□□ -0.75
MSH5O43196 SLC2A3P1-201ENST00000519666 1451 ntBASIC10.37□□□□□ -0.75
MSH5O43196 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC10.37□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms