Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
COL4A4P53420 RNU6-316P-201ENST00000391027 107 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 SFR1P2-201ENST00000421841 730 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 AC093698.1-201ENST00000423843 571 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC3.63□□□□□ -1.83
COL4A4P53420 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 NPM1P39-201ENST00000449818 867 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.63□□□□□ -1.83
COL4A4P53420 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 RN7SL863P-201ENST00000462370 296 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 RPL23AP73-201ENST00000492507 471 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 RNU6-237P-201ENST00000515985 71 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 SCARNA20.6-201ENST00000517251 106 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 IGKV2-26-201ENST00000518305 343 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 RPL12P22-201ENST00000519073 490 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 AL121603.1-201ENST00000553815 142 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.63□□□□□ -1.83
COL4A4P53420 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 AC009268.1-201ENST00000561352 1203 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC3.63□□□□□ -1.83
COL4A4P53420 AL049840.6-202ENST00000603373 279 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 MIR7106-201ENST00000612419 65 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.63□□□□□ -1.83
COL4A4P53420 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
COL4A4P53420 MTCO1P8-201ENST00000416914 1523 ntBASIC3.63□□□□□ -1.83
COL4A4P53420 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
COL4A4P53420 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A4P53420 AL117351.1-201ENST00000438864 766 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A4P53420 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 VN1R48P-201ENST00000448149 1036 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 DUXAP6-201ENST00000553858 601 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 HMGN2P47-201ENST00000559378 272 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 MIR4738-201ENST00000579134 87 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 MIR4760-201ENST00000585040 80 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AC097520.1-201ENST00000624435 385 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AC009039.2-201ENST00000624524 529 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A4P53420 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
COL4A4P53420 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
COL4A4P53420 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 Z83843.1-201ENST00000604070 3685 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 SNORA5B-201ENST00000363786 132 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 GCNT6-201ENST00000379591 934 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 SNORA48.8-201ENST00000391324 134 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 Z99755.1-201ENST00000414048 380 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 MTCYBP32-201ENST00000427945 1084 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A4P53420 GXYLT1P1-201ENST00000446657 490 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AL353718.1-201ENST00000451028 517 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AC098826.2-201ENST00000452011 651 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 OR2A20P-203ENST00000498397 1268 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 HMGB1P21-201ENST00000502313 581 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 AC010460.2-201ENST00000509054 677 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A4P53420 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.62□□□□□ -1.83
COL4A4P53420 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.62□□□□□ -1.83
COL4A4P53420 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.62□□□□□ -1.83
COL4A4P53420 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
COL4A4P53420 AC097655.1-201ENST00000635075 318 ntBASIC3.62□□□□□ -1.83
COL4A4P53420 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
COL4A4P53420 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 AF117829.1-206ENST00000621883 3802 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
COL4A4P53420 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.61□□□□□ -1.83
COL4A4P53420 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 HSPA8P19-201ENST00000505359 1517 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL4A4P53420 RNA5SP293-201ENST00000410527 113 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.61□□□□□ -1.83
COL4A4P53420 MTND4P22-201ENST00000413116 1169 ntBASIC3.61□□□□□ -1.83
COL4A4P53420 MTCYBP15-201ENST00000433123 1127 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms