Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 CPHL1P-201ENST00000461341 3407 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC005539.1-201ENST00000443768 1479 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AL512646.1-201ENST00000269395 1077 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 RNU6-931P-201ENST00000363850 107 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 Y_RNA.436-201ENST00000384097 102 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RNU6-1300P-201ENST00000391046 108 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RPL31P52-201ENST00000407532 367 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RNU2-42P-201ENST00000410697 113 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AL591503.2-201ENST00000442314 1005 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 DAP3-209ENST00000465375 729 ntTSL 2 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC112206.1-201ENST00000468416 477 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RN7SL354P-201ENST00000469282 294 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 MTND6P6-201ENST00000478031 263 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.29□□□□□ -1.56
SMARCA1P28370 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 HMGB3P13-201ENST00000511263 607 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 RN7SKP46-201ENST00000515942 234 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 AP001781.1-201ENST00000530977 207 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC084824.1-201ENST00000550917 1005 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 MIR3915-201ENST00000578518 97 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 OR4K7P-201ENST00000580232 945 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 RN7SL52P-201ENST00000584271 284 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AC008782.1-201ENST00000603386 430 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AC009220.3-201ENST00000604318 586 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AL592221.1-201ENST00000605266 382 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AC135507.1-201ENST00000607214 561 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AL133243.1-201ENST00000614487 366 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RN7SL722P-201ENST00000617780 284 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 RN7SL565P-201ENST00000618246 284 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.29□□□□□ -1.56
SMARCA1P28370 AP003072.4-201ENST00000624580 310 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 AL049536.1-201ENST00000625043 744 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
SMARCA1P28370 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 LINC00622-201ENST00000562811 1570 ntBASIC5.29□□□□□ -1.56
SMARCA1P28370 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SMARCA1P28370 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SMARCA1P28370 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SMARCA1P28370 RNU6-582P-201ENST00000362989 107 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 RNU5D-1-201ENST00000363299 116 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 RNU6-621P-201ENST00000364752 109 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 SNORD116-23-201ENST00000384645 92 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 HNRNPDP2-201ENST00000406475 478 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 BTF3L4P1-201ENST00000413813 468 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC5.28□□□□□ -1.56
SMARCA1P28370 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 AC019178.2-201ENST00000423595 505 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 Z74021.1-201ENST00000423610 407 ntBASIC5.28□□□□□ -1.56
SMARCA1P28370 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.28□□□□□ -1.56
SMARCA1P28370 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SMARCA1P28370 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.28□□□□□ -1.56
SMARCA1P28370 RAB11AP1-201ENST00000442978 646 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms