RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 AEBP2Q6ZN18 517 aaPredicted RBP25.43■■□□□ 1.66
HMGB3P13-201ENST00000511263 CHIC1Q5VXU3 224 aa23.98■■□□□ 1.43
HMGB3P13-201ENST00000511263 SENP3Q9H4L4 574 aaPredicted RBP21.59■■□□□ 1.05
HMGB3P13-201ENST00000511263 PHF23Q9BUL5 403 aaPredicted RBP21.35■■□□□ 1.01
HMGB3P13-201ENST00000511263 FOXD1Q16676 465 aa20.22■□□□□ 0.83
HMGB3P13-201ENST00000511263 PLPPR3Q6T4P5 718 aa19.06■□□□□ 0.64
HMGB3P13-201ENST00000511263 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
HMGB3P13-201ENST00000511263 MSH5O43196 834 aa18.84■□□□□ 0.61
HMGB3P13-201ENST00000511263 PIAS4Q8N2W9 510 aaPredicted RBP18.84■□□□□ 0.61
HMGB3P13-201ENST00000511263 ADRA2BP18089 450 aa18.8■□□□□ 0.6
HMGB3P13-201ENST00000511263 POTEDQ86YR6 584 aa18.66■□□□□ 0.58
HMGB3P13-201ENST00000511263 MAPK8IP2Q13387 824 aaPredicted RBP17.31■□□□□ 0.36
HMGB3P13-201ENST00000511263 DMRT2Q9Y5R5 561 aa17.13■□□□□ 0.33
HMGB3P13-201ENST00000511263 SCAF1Q9H7N4 1312 aaKnown RBP17.03■□□□□ 0.32
HMGB3P13-201ENST00000511263 PPP4R3CPQ6ZMV5 832 aa16.75■□□□□ 0.27
HMGB3P13-201ENST00000511263 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
HMGB3P13-201ENST00000511263 HOXD11P31277 338 aaPredicted RBP16.45■□□□□ 0.22
HMGB3P13-201ENST00000511263 CNKSR2Q8WXI2 1034 aa16.41■□□□□ 0.22
HMGB3P13-201ENST00000511263 CACNB1Q02641 598 aaPredicted RBP16.28■□□□□ 0.2
HMGB3P13-201ENST00000511263 RNF216Q9NWF9 866 aaPredicted RBP16.28■□□□□ 0.2
HMGB3P13-201ENST00000511263 RNF39Q9H2S5 420 aa16.13■□□□□ 0.17
HMGB3P13-201ENST00000511263 NCBP3Q53F19 620 aaKnown RBP15.99■□□□□ 0.15
HMGB3P13-201ENST00000511263 NPM3O75607 178 aaKnown RBP15.85■□□□□ 0.13
HMGB3P13-201ENST00000511263 C1QBPQ07021 282 aaKnown RBP15.84■□□□□ 0.13
HMGB3P13-201ENST00000511263 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
HMGB3P13-201ENST00000511263 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.1
HMGB3P13-201ENST00000511263 KCNA4P22459 653 aa15.51■□□□□ 0.07
HMGB3P13-201ENST00000511263 U3KPZ7 1027 aaPredicted RBP15.38■□□□□ 0.05
HMGB3P13-201ENST00000511263 SPINK5Q9NQ38 1064 aaPredicted RBP15.22■□□□□ 0.03
HMGB3P13-201ENST00000511263 SLC4A2P04920 1241 aa15.2■□□□□ 0.02
HMGB3P13-201ENST00000511263 CAPN15O75808 1086 aa15.14■□□□□ 0.01
HMGB3P13-201ENST00000511263 DSG3P32926 999 aa15.09■□□□□ 0.01
HMGB3P13-201ENST00000511263 TRHP20396 242 aaPredicted RBP14.89□□□□□ -0.03
HMGB3P13-201ENST00000511263 ABCB7O75027 752 aa14.83□□□□□ -0.04
HMGB3P13-201ENST00000511263 ZNF219Q9P2Y4 722 aaPredicted RBP14.78□□□□□ -0.04
HMGB3P13-201ENST00000511263 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.77□□□□□ -0.05
HMGB3P13-201ENST00000511263 APLP2Q06481 763 aa14.77□□□□□ -0.05
HMGB3P13-201ENST00000511263 HNRNPUL2Q1KMD3 747 aaKnown RBP14.77□□□□□ -0.05
HMGB3P13-201ENST00000511263 SAMD1Q6SPF0 538 aaPredicted RBP14.72□□□□□ -0.05
HMGB3P13-201ENST00000511263 MYCNP04198 464 aaPredicted RBP14.61□□□□□ -0.07
HMGB3P13-201ENST00000511263 POTEHQ6S545 545 aa14.58□□□□□ -0.08
HMGB3P13-201ENST00000511263 SLC4A1APQ9BWU0 796 aaKnown RBP14.56□□□□□ -0.08
HMGB3P13-201ENST00000511263 POLA2Q14181 598 aa14.46□□□□□ -0.09
HMGB3P13-201ENST00000511263 FOXD4L1Q9NU39 408 aa14.42□□□□□ -0.1
HMGB3P13-201ENST00000511263 ATF5Q9Y2D1 282 aaPredicted RBP14.4□□□□□ -0.1
HMGB3P13-201ENST00000511263 RBM42Q9BTD8 480 aaKnown RBP14.3□□□□□ -0.12
HMGB3P13-201ENST00000511263 ZBTB22O15209 634 aa14.29□□□□□ -0.12
HMGB3P13-201ENST00000511263 CHRDL2Q6WN34 429 aa14.11□□□□□ -0.15
HMGB3P13-201ENST00000511263 ZBTB12Q9Y330 459 aaPredicted RBP14.05□□□□□ -0.16
HMGB3P13-201ENST00000511263 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
HMGB3P13-201ENST00000511263 AKT1S1Q96B36 256 aa13.99□□□□□ -0.17
HMGB3P13-201ENST00000511263 ATXN8OSP0DMR3 200 aa13.94□□□□□ -0.18
HMGB3P13-201ENST00000511263 REM2Q8IYK8 340 aaPredicted RBP13.91□□□□□ -0.18
HMGB3P13-201ENST00000511263 PITPNM1O00562 1244 aa13.78□□□□□ -0.2
HMGB3P13-201ENST00000511263 PIP4P2Q8N4L2 257 aa13.77□□□□□ -0.21
HMGB3P13-201ENST00000511263 EHMT2Q96KQ7 1210 aa13.76□□□□□ -0.21
HMGB3P13-201ENST00000511263 FBLN2P98095 1184 aa13.71□□□□□ -0.21
HMGB3P13-201ENST00000511263 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
HMGB3P13-201ENST00000511263 SPDYE2BA6NHP3 402 aa13.66□□□□□ -0.22
HMGB3P13-201ENST00000511263 SPDYE6P0CI01 402 aa13.66□□□□□ -0.22
HMGB3P13-201ENST00000511263 SPDYE2Q495Y8 402 aa13.66□□□□□ -0.22
HMGB3P13-201ENST00000511263 FXR2P51116 673 aaKnown RBP eCLIP13.65□□□□□ -0.22
HMGB3P13-201ENST00000511263 SP7Q8TDD2 431 aaPredicted RBP13.61□□□□□ -0.23
HMGB3P13-201ENST00000511263 CSRNP3Q8WYN3 585 aa13.56□□□□□ -0.24
HMGB3P13-201ENST00000511263 HAX1O00165 279 aa13.53□□□□□ -0.24
HMGB3P13-201ENST00000511263 ZNF692Q9BU19 519 aaPredicted RBP13.51□□□□□ -0.25
HMGB3P13-201ENST00000511263 SSUH2Q9Y2M2 353 aa13.51□□□□□ -0.25
HMGB3P13-201ENST00000511263 CLEC11AQ9Y240 323 aa13.48□□□□□ -0.25
HMGB3P13-201ENST00000511263 EVX2Q03828 476 aa13.45□□□□□ -0.26
HMGB3P13-201ENST00000511263 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
HMGB3P13-201ENST00000511263 PRKAR2AP13861 404 aaKnown RBP13.41□□□□□ -0.26
HMGB3P13-201ENST00000511263 PABPN1Q86U42 306 aaKnown RBP eCLIP13.34□□□□□ -0.27
HMGB3P13-201ENST00000511263 CHADLQ6NUI6 762 aa13.28□□□□□ -0.28
HMGB3P13-201ENST00000511263 C19orf67A6NJJ6 358 aa13.22□□□□□ -0.29
HMGB3P13-201ENST00000511263 PRR29P0C7W0 189 aa13.21□□□□□ -0.29
HMGB3P13-201ENST00000511263 GABBR2O75899 941 aa13.06□□□□□ -0.32
HMGB3P13-201ENST00000511263 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
HMGB3P13-201ENST00000511263 CD44P16070 742 aaKnown RBP12.97□□□□□ -0.33
HMGB3P13-201ENST00000511263 SPDYE4A6NLX3 237 aa12.95□□□□□ -0.34
HMGB3P13-201ENST00000511263 CREBZFQ9NS37 354 aa12.91□□□□□ -0.34
HMGB3P13-201ENST00000511263 STAG3Q9UJ98 1225 aa12.85□□□□□ -0.35
HMGB3P13-201ENST00000511263 POTEIP0CG38 1075 aa12.84□□□□□ -0.35
HMGB3P13-201ENST00000511263 LHX8Q68G74 356 aa12.77□□□□□ -0.37
HMGB3P13-201ENST00000511263 ZRANB1Q9UGI0 708 aa12.77□□□□□ -0.37
HMGB3P13-201ENST00000511263 ZNF579Q8NAF0 562 aaKnown RBP12.75□□□□□ -0.37
HMGB3P13-201ENST00000511263 MNX1P50219 401 aaPredicted RBP12.69□□□□□ -0.38
HMGB3P13-201ENST00000511263 CLCN6P51797 869 aa12.67□□□□□ -0.38
HMGB3P13-201ENST00000511263 GALR2O43603 387 aaPredicted RBP12.66□□□□□ -0.38
HMGB3P13-201ENST00000511263 DCBLD2Q96PD2 775 aa12.65□□□□□ -0.38
HMGB3P13-201ENST00000511263 PHF12Q96QT6 1004 aa12.64□□□□□ -0.39
HMGB3P13-201ENST00000511263 PROM2Q8N271 834 aa12.63□□□□□ -0.39
HMGB3P13-201ENST00000511263 PAK3O75914 559 aaPredicted RBP12.57□□□□□ -0.4
HMGB3P13-201ENST00000511263 NPM1P06748 294 aaKnown RBP eCLIP12.57□□□□□ -0.4
HMGB3P13-201ENST00000511263 PELP1Q8IZL8 1130 aaKnown RBP12.45□□□□□ -0.42
HMGB3P13-201ENST00000511263 MS4A3Q96HJ5 214 aa12.45□□□□□ -0.42
HMGB3P13-201ENST00000511263 TSPYL2Q9H2G4 693 aaPredicted RBP12.45□□□□□ -0.42
HMGB3P13-201ENST00000511263 POTEB2H3BUK9 544 aa12.43□□□□□ -0.42
HMGB3P13-201ENST00000511263 CCDC61Q9Y6R9 512 aa12.38□□□□□ -0.43
HMGB3P13-201ENST00000511263 MIER1Q8N108 512 aa12.36□□□□□ -0.43
HMGB3P13-201ENST00000511263 OTUD5Q96G74 571 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms