Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LIMA1Q9UHB6 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 NCF1B-203ENST00000435988 1254 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 PNMA6B-201ENST00000538162 1200 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 MIR4758-201ENST00000577688 71 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 AC120498.8-201ENST00000614275 531 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 FEM1AP3-201ENST00000403722 1741 ntBASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.09■□□□□ 0.97
LIMA1Q9UHB6 AC104581.1-202ENST00000635932 2618 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 AL512353.2-201ENST00000448759 1962 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 SLC29A4P1-201ENST00000398760 971 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 AC097658.1-201ENST00000475555 843 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 AC060766.5-201ENST00000590539 871 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 AL121829.2-201ENST00000620908 328 ntBASIC21.08■□□□□ 0.97
LIMA1Q9UHB6 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 AC120498.9-201ENST00000339021 3867 ntBASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.08■□□□□ 0.96
LIMA1Q9UHB6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 WIZP1-201ENST00000531444 2299 ntBASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
LIMA1Q9UHB6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.06■□□□□ 0.96
LIMA1Q9UHB6 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms