Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 BID-214ENST00000617586 542 ntTSL 5 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 AC008694.1-202ENST00000636953 945 ntBASIC19.16■□□□□ 0.66
SSU72Q9NP77 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SSU72Q9NP77 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSU72Q9NP77 ABALON-201ENST00000629058 1903 ntBASIC19.15■□□□□ 0.66
SSU72Q9NP77 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 AC073210.2-201ENST00000430369 194 ntBASIC19.15■□□□□ 0.66
SSU72Q9NP77 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 OR10C1-204ENST00000622521 1039 ntBASIC19.15■□□□□ 0.66
SSU72Q9NP77 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.15■□□□□ 0.66
SSU72Q9NP77 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SSU72Q9NP77 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
SSU72Q9NP77 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.14■□□□□ 0.66
SSU72Q9NP77 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.14■□□□□ 0.66
SSU72Q9NP77 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSU72Q9NP77 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SSU72Q9NP77 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 KRT17P1-201ENST00000399211 1546 ntBASIC19.14■□□□□ 0.65
SSU72Q9NP77 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.14■□□□□ 0.65
SSU72Q9NP77 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SSU72Q9NP77 AC018470.1-201ENST00000624790 3129 ntBASIC19.14■□□□□ 0.65
SSU72Q9NP77 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
SSU72Q9NP77 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.13■□□□□ 0.65
SSU72Q9NP77 GPX1P1-201ENST00000388829 606 ntBASIC19.13■□□□□ 0.65
SSU72Q9NP77 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SSU72Q9NP77 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SSU72Q9NP77 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.13■□□□□ 0.65
SSU72Q9NP77 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SSU72Q9NP77 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms