Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
TIMP4Q99727 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 FAM197Y1-201ENST00000421178 764 ntBASIC17.71■□□□□ 0.43
TIMP4Q99727 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.71■□□□□ 0.43
TIMP4Q99727 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 AC026471.5-201ENST00000615068 467 ntBASIC17.71■□□□□ 0.43
TIMP4Q99727 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.71■□□□□ 0.43
TIMP4Q99727 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
TIMP4Q99727 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
TIMP4Q99727 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 AC009237.14-201ENST00000609975 1594 ntBASIC17.7■□□□□ 0.42
TIMP4Q99727 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 AL355355.2-201ENST00000442321 338 ntBASIC17.7■□□□□ 0.42
TIMP4Q99727 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.7■□□□□ 0.42
TIMP4Q99727 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.7■□□□□ 0.42
TIMP4Q99727 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.7■□□□□ 0.42
TIMP4Q99727 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 AC093503.3-201ENST00000624917 2352 ntBASIC17.7■□□□□ 0.42
TIMP4Q99727 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.7■□□□□ 0.42
TIMP4Q99727 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.7■□□□□ 0.42
TIMP4Q99727 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TIMP4Q99727 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.69■□□□□ 0.42
TIMP4Q99727 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
TIMP4Q99727 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.69■□□□□ 0.42
TIMP4Q99727 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
TIMP4Q99727 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 YBX1P10-201ENST00000444752 975 ntBASIC17.69■□□□□ 0.42
TIMP4Q99727 TSPY15P-201ENST00000457163 923 ntBASIC17.69■□□□□ 0.42
TIMP4Q99727 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.69■□□□□ 0.42
TIMP4Q99727 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 BX088651.1-201ENST00000540551 451 ntBASIC17.69■□□□□ 0.42
TIMP4Q99727 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.69■□□□□ 0.42
TIMP4Q99727 AP003071.4-201ENST00000562276 1284 ntBASIC17.69■□□□□ 0.42
TIMP4Q99727 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TIMP4Q99727 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
TIMP4Q99727 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.68■□□□□ 0.42
TIMP4Q99727 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TIMP4Q99727 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TIMP4Q99727 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms