Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 RARRES2P10-201ENST00000564312 460 ntBASIC18.8■□□□□ 0.6
PKP4Q99569 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.8■□□□□ 0.6
PKP4Q99569 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.8■□□□□ 0.6
PKP4Q99569 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKP4Q99569 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
PKP4Q99569 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKP4Q99569 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
PKP4Q99569 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKP4Q99569 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.8■□□□□ 0.6
PKP4Q99569 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PKP4Q99569 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.79■□□□□ 0.6
PKP4Q99569 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
PKP4Q99569 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.79■□□□□ 0.6
PKP4Q99569 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.79■□□□□ 0.6
PKP4Q99569 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
PKP4Q99569 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
PKP4Q99569 AP002982.1-201ENST00000492365 877 ntBASIC18.79■□□□□ 0.6
PKP4Q99569 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.79■□□□□ 0.6
PKP4Q99569 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.79■□□□□ 0.6
PKP4Q99569 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.79■□□□□ 0.6
PKP4Q99569 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.79■□□□□ 0.6
PKP4Q99569 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
PKP4Q99569 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.78■□□□□ 0.6
PKP4Q99569 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PKP4Q99569 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 RPS2P4-201ENST00000476944 856 ntBASIC18.78■□□□□ 0.6
PKP4Q99569 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.78■□□□□ 0.6
PKP4Q99569 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.78■□□□□ 0.6
PKP4Q99569 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
PKP4Q99569 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.78■□□□□ 0.6
PKP4Q99569 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
PKP4Q99569 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PKP4Q99569 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
PKP4Q99569 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.77■□□□□ 0.6
PKP4Q99569 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
PKP4Q99569 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
PKP4Q99569 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.77■□□□□ 0.6
PKP4Q99569 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.77■□□□□ 0.6
PKP4Q99569 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 NIFKP9-201ENST00000419265 221 ntBASIC18.77■□□□□ 0.6
PKP4Q99569 AL353807.1-201ENST00000427475 662 ntBASIC18.77■□□□□ 0.6
PKP4Q99569 AL160286.2-201ENST00000567150 934 ntBASIC18.77■□□□□ 0.6
PKP4Q99569 AF186192.3-201ENST00000583427 947 ntBASIC18.77■□□□□ 0.6
PKP4Q99569 AL353708.3-201ENST00000610272 989 ntBASIC18.77■□□□□ 0.6
PKP4Q99569 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
PKP4Q99569 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PKP4Q99569 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.77■□□□□ 0.6
PKP4Q99569 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKP4Q99569 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.59
PKP4Q99569 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKP4Q99569 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKP4Q99569 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
PKP4Q99569 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PKP4Q99569 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.76■□□□□ 0.59
PKP4Q99569 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
PKP4Q99569 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.76■□□□□ 0.59
PKP4Q99569 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.76■□□□□ 0.59
PKP4Q99569 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PKP4Q99569 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PKP4Q99569 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.76■□□□□ 0.59
PKP4Q99569 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 AL445675.2-201ENST00000620291 557 ntBASIC18.76■□□□□ 0.59
PKP4Q99569 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PKP4Q99569 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.76■□□□□ 0.59
PKP4Q99569 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms