Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 AC073648.6-201ENST00000641589 218 ntBASIC18.22■□□□□ 0.51
COL21A1Q96P44 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
COL21A1Q96P44 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
COL21A1Q96P44 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 AC128676.1-201ENST00000454392 318 ntBASIC18.21■□□□□ 0.51
COL21A1Q96P44 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL21A1Q96P44 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL21A1Q96P44 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 AC093503.3-201ENST00000624917 2352 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 KRT18P29-201ENST00000397031 1267 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 PRKY-204ENST00000533551 1019 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 AC233263.1-201ENST00000578059 224 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 ITM2C-210ENST00000620962 501 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL21A1Q96P44 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
COL21A1Q96P44 AC138932.1-201ENST00000534164 6830 ntBASIC18.2■□□□□ 0.5
COL21A1Q96P44 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL21A1Q96P44 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL21A1Q96P44 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.19■□□□□ 0.5
COL21A1Q96P44 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL21A1Q96P44 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
COL21A1Q96P44 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.19■□□□□ 0.5
COL21A1Q96P44 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms