Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SKA1Q96BD8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SKA1Q96BD8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 KRT18P21-201ENST00000515767 1272 ntBASIC19.79■□□□□ 0.76
SKA1Q96BD8 AL355075.4-201ENST00000554988 638 ntBASIC19.79■□□□□ 0.76
SKA1Q96BD8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.79■□□□□ 0.76
SKA1Q96BD8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 AC093503.3-201ENST00000624917 2352 ntBASIC19.79■□□□□ 0.76
SKA1Q96BD8 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.79■□□□□ 0.76
SKA1Q96BD8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SKA1Q96BD8 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 AL691432.2-201ENST00000607222 2038 ntBASIC19.78■□□□□ 0.76
SKA1Q96BD8 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.78■□□□□ 0.76
SKA1Q96BD8 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SKA1Q96BD8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SKA1Q96BD8 AP002982.1-201ENST00000492365 877 ntBASIC19.77■□□□□ 0.76
SKA1Q96BD8 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
SKA1Q96BD8 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SKA1Q96BD8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.75
SKA1Q96BD8 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SKA1Q96BD8 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.77■□□□□ 0.75
SKA1Q96BD8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 MMP23A-201ENST00000234610 1017 ntBASIC19.76■□□□□ 0.75
SKA1Q96BD8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms