Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 WIZP1-201ENST00000531444 2299 ntBASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
NUDCD3Q8IVD9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 AL390961.4-201ENST00000623958 2535 ntBASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ZNRF2P3-201ENST00000424200 374 ntBASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 DUX4L16-201ENST00000555130 1264 ntBASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 AC090164.3-201ENST00000610780 2143 ntBASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 AL031598.1-201ENST00000561511 1773 ntBASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NUDCD3Q8IVD9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 AC135050.7-201ENST00000624508 2218 ntBASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
NUDCD3Q8IVD9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUDCD3Q8IVD9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.14■□□□□ 0.66
NUDCD3Q8IVD9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUDCD3Q8IVD9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NUDCD3Q8IVD9 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 AC034268.1-201ENST00000441047 882 ntBASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
NUDCD3Q8IVD9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms