Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.9■□□□□ 0.62
VRK3Q8IV63 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VRK3Q8IV63 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VRK3Q8IV63 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
VRK3Q8IV63 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VRK3Q8IV63 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 KSR1P1-201ENST00000446298 240 ntBASIC18.89■□□□□ 0.61
VRK3Q8IV63 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 Z85996.1-201ENST00000494644 937 ntBASIC18.89■□□□□ 0.61
VRK3Q8IV63 AC008550.1-201ENST00000511500 884 ntBASIC18.89■□□□□ 0.61
VRK3Q8IV63 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 AC073195.1-201ENST00000607241 877 ntBASIC18.89■□□□□ 0.61
VRK3Q8IV63 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VRK3Q8IV63 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.89■□□□□ 0.61
VRK3Q8IV63 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 FAM197Y1-201ENST00000421178 764 ntBASIC18.88■□□□□ 0.61
VRK3Q8IV63 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 AC233702.5-201ENST00000584107 538 ntBASIC18.88■□□□□ 0.61
VRK3Q8IV63 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 AC113410.3-201ENST00000623366 203 ntBASIC18.88■□□□□ 0.61
VRK3Q8IV63 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.88■□□□□ 0.61
VRK3Q8IV63 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.88■□□□□ 0.61
VRK3Q8IV63 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VRK3Q8IV63 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 KRT16P1-201ENST00000399124 1418 ntBASIC18.87■□□□□ 0.61
VRK3Q8IV63 AC012618.2-201ENST00000428058 849 ntBASIC18.87■□□□□ 0.61
VRK3Q8IV63 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.87■□□□□ 0.61
VRK3Q8IV63 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 AL135905.2-201ENST00000584934 1404 ntBASIC18.87■□□□□ 0.61
VRK3Q8IV63 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.87■□□□□ 0.61
VRK3Q8IV63 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VRK3Q8IV63 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 KRT8P41-201ENST00000533985 1514 ntBASIC18.86■□□□□ 0.61
VRK3Q8IV63 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VRK3Q8IV63 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.86■□□□□ 0.61
VRK3Q8IV63 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms