Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LRIF1Q5T3J3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRIF1Q5T3J3 AC009113.1-201ENST00000570267 2443 ntBASIC18.21■□□□□ 0.51
LRIF1Q5T3J3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LRIF1Q5T3J3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRIF1Q5T3J3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LRIF1Q5T3J3 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 AL121906.2-201ENST00000621597 723 ntBASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.2■□□□□ 0.5
LRIF1Q5T3J3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 CROCCP5-201ENST00000436658 830 ntBASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 AC091874.3-201ENST00000512672 1195 ntBASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 AC120498.9-201ENST00000339021 3867 ntBASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
LRIF1Q5T3J3 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 AL512353.2-201ENST00000448759 1962 ntBASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LRIF1Q5T3J3 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms