Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 ZNF815P-204ENST00000434898 1737 ntBASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PTCHD3Q3KNS1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 NBPF21P-201ENST00000425093 1451 ntBASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 TSPY7P-201ENST00000431358 1114 ntBASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
PTCHD3Q3KNS1 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 AL049637.2-201ENST00000641778 930 ntBASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
PTCHD3Q3KNS1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.84■□□□□ 0.61
PTCHD3Q3KNS1 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 AL135905.2-201ENST00000584934 1404 ntBASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PTCHD3Q3KNS1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.83■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms