Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
LSM3P62310 AC141586.3-201ENST00000562166 1838 ntBASIC17.4■□□□□ 0.38
LSM3P62310 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LSM3P62310 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LSM3P62310 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LSM3P62310 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LSM3P62310 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.39■□□□□ 0.38
LSM3P62310 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
LSM3P62310 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LSM3P62310 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LSM3P62310 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.39■□□□□ 0.37
LSM3P62310 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.39■□□□□ 0.37
LSM3P62310 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LSM3P62310 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
LSM3P62310 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
LSM3P62310 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.38■□□□□ 0.37
LSM3P62310 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 AC007322.3-201ENST00000426526 701 ntBASIC17.38■□□□□ 0.37
LSM3P62310 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.38■□□□□ 0.37
LSM3P62310 AC233992.3-201ENST00000607491 485 ntBASIC17.38■□□□□ 0.37
LSM3P62310 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.38■□□□□ 0.37
LSM3P62310 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LSM3P62310 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.38■□□□□ 0.37
LSM3P62310 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LSM3P62310 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.37■□□□□ 0.37
LSM3P62310 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.37■□□□□ 0.37
LSM3P62310 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 AC093525.10-201ENST00000625130 1569 ntBASIC17.37■□□□□ 0.37
LSM3P62310 AL512353.2-201ENST00000448759 1962 ntBASIC17.37■□□□□ 0.37
LSM3P62310 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LSM3P62310 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC17.37■□□□□ 0.37
LSM3P62310 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.37■□□□□ 0.37
LSM3P62310 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.37■□□□□ 0.37
LSM3P62310 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
LSM3P62310 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LSM3P62310 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.37■□□□□ 0.37
LSM3P62310 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LSM3P62310 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LSM3P62310 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms