Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.7■□□□□ 0.58
FOXA1P55317 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
FOXA1P55317 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
FOXA1P55317 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
FOXA1P55317 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA1P55317 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA1P55317 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.69■□□□□ 0.58
FOXA1P55317 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.69■□□□□ 0.58
FOXA1P55317 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.69■□□□□ 0.58
FOXA1P55317 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.69■□□□□ 0.58
FOXA1P55317 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
FOXA1P55317 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
FOXA1P55317 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
FOXA1P55317 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
FOXA1P55317 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXA1P55317 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.68■□□□□ 0.58
FOXA1P55317 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXA1P55317 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.68■□□□□ 0.58
FOXA1P55317 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.68■□□□□ 0.58
FOXA1P55317 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.68■□□□□ 0.58
FOXA1P55317 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.68■□□□□ 0.58
FOXA1P55317 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXA1P55317 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
FOXA1P55317 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXA1P55317 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.68■□□□□ 0.58
FOXA1P55317 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.68■□□□□ 0.58
FOXA1P55317 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.68■□□□□ 0.58
FOXA1P55317 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
FOXA1P55317 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 IRX1P1-201ENST00000438849 1838 ntBASIC18.67■□□□□ 0.58
FOXA1P55317 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXA1P55317 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.67■□□□□ 0.58
FOXA1P55317 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXA1P55317 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.67■□□□□ 0.58
FOXA1P55317 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
FOXA1P55317 KRT18P16-201ENST00000510337 1294 ntBASIC18.67■□□□□ 0.58
FOXA1P55317 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.67■□□□□ 0.58
FOXA1P55317 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
FOXA1P55317 SOX15-203ENST00000570788 1093 ntBASIC18.67■□□□□ 0.58
FOXA1P55317 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
FOXA1P55317 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
FOXA1P55317 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
FOXA1P55317 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
FOXA1P55317 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXA1P55317 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXA1P55317 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.66■□□□□ 0.58
FOXA1P55317 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.66■□□□□ 0.58
FOXA1P55317 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
FOXA1P55317 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
FOXA1P55317 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms